AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01194 ATGGCAGCAGCAGTTGGAGCATTAAAACCACCACATTTCATCACTTCCTCCTCCTCATCATCTGACAAAAGAACCAACCTCCTCCGTTCATCCTTATCATTCTCCTCATCACTTTGTGAAAGAATATCTTCATCCGTACAACCACGTCGTAGGAGTAGTAATAGTAATGGTAGTAGTAGTAGAGCTCCGTTAGTTGTTTGTCCGAAATCAGTTTCGGATTCTAAGAATTCGCAGACATGTCTTGATCCTGACGCTAGCCAAAGTGTTTTGGGTATAATACTCGGAGGTGGAGCGGGGACTCGTCTCTATCCTTTAACAAAGAAGAGAGCGAAGCCTGCTGTTCCTTTGGGAGCAAACTATCGCCTAATCGACATTCCTGTCAGCAATTGCTTGAACAGCAACATTTCAAAGATTTACGTTCTTACACAGTTCAACTCTGCTTCACTTAATCGTCACCTTTCACGGGCTTATGCAAGTAACATGGGTGGTTATAAGAATGAAGGGTTTGTTGAAGTCCTTGCTGCTCAACAAAGTCCCGAGAATCCAAACTGGTTTCAGGGTACTGCCGATGCTGTAAGGCAGTATTTGTGGCTGTTTGAAGAGCATAATGTTCTAGAGTTCCTTATCCTTGCTGGAGATCACTTATATCGTATGGATTACGAGAAGTTTATTCAAGCTCACAGAGAAACAGATGCTGATATCACTGTAGCAGCTCTGCCAATGGATGAAAAGCGTGCAACTGCATTTGGTCTCATGAAGATTGATGAAGAAGGGCGTATAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAACTGAAAGCTATGAAAGTTGATACTACAATTTTAGGACTTGATGAGGAGAGAGCTAAAGAGATGCCTTATATTGCTAGTATGGGTATATATGTTGTCAGCAAAGATGTAATGTTGGATTTGCTGCGAGATAAGTTCCCTGGAGCAAATGATTTTGGAAGTGAAGTAATTCCTGGAGCAACTTCTATTGGGCTAAGAGTACAAGCTTATCTTTATGATGGTTACTGGGAAGATATTGGTACCATTGAGGCTTTCTATAATGCCAATTTGGGAATTACAAAGAAACCAGTGCCAGATTTCAGTTTCTACGATCGTTCGTCTCCTATTTACACCCAACCTCGATATTTGCCTCCTTCCAAGATGCTTGATGCTGATGTCACAGATAGTGTTATTGGTGAAGGGTGTGTGATTAAGAACTGCAAAATTCATCATTCTGTTGTTGGACTTCGATCTTGCATAGCTGAAGGTGCAGTCATTGAAGATTCATTGCTGATGGGAGCAGATTATTATGAGACTGATGCTGACAGGGAGCTTCTTGCTGCAAAAGGTAGTGTTCCGATTGGTATTGGGAAGAACACTCACATCAAAAGAGCAATCATTGACAAGAATGCACGCATAGGAGACAATGTGAAGATTATAAACAGTGATAACGTTCAAGAAGCAGCAAGAGAAACAGATGGGTACTTCATAAAAAGCGGAATCGTGACAGTCATCAAAGATGCGTTGATTCCTTCTGGCAGCATTATCTAG 1560 41.54 MAAAVGALKPPHFITSSSSSSDKRTNLLRSSLSFSSSLCERISSSVQPRRRSSNSNGSSSRAPLVVCPKSVSDSKNSQTCLDPDASQSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDEERAKEMPYIASMGIYVVSKDVMLDLLRDKFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIAEGAVIEDSLLMGADYYETDADRELLAAKGSVPIGIGKNTHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGSII 519
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01194 519 SUPERFAMILY Trimeric LpxA-like enzymes 382 519 IPR011004 -
Aann4g01194 519 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 45 519 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Aann4g01194 519 CDD ADP-Glucose-PP 100 349 - -
Aann4g01194 519 Gene3D Hexapeptide repeat proteins 385 519 - -
Aann4g01194 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 184 192 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Aann4g01194 519 Pfam Nucleotidyl transferase 91 364 IPR005835 GO:0009058(InterPro)
Aann4g01194 519 FunFam Glucose-1-phosphate adenylyltransferase 70 384 - -
Aann4g01194 519 NCBIfam glucose-1-phosphate adenylyltransferase 89 483 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Aann4g01194 519 CDD LbH-G1P-AT-C 387 513 - -
Aann4g01194 519 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 69 384 IPR029044 -
Aann4g01194 519 FunFam Glucose-1-phosphate adenylyltransferase 385 519 - -
Aann4g01194 519 MobiDBLite consensus disorder prediction 45 64 - -
Aann4g01194 519 SUPERFAMILY Nucleotide-diphospho-sugar transferases 88 480 IPR029044 -
Aann4g01194 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 95 114 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Aann4g01194 519 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 296 306 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01194 K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr3:57752296 Aann4g01194 Aann-Chr4:64739925 dispersed
Aann Aann-Chr4:64739925 Aann8g02734 Aann-Chr8:123737551 dispersed