AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aann4g01268 | ATGTCATCAAAATCCACTACTAGTAGAACCAAAAGTAACTCTTCAAGATTGAAACATGATGCTAGAGTTGTGTCCCAAACACCAATTGATGCTAAACTTCATGTTGAATTTGAAGAATCTGATAAGAAATTTGATTATTCAACTTCAGTTGATGTTAATAATGCATCAACTTCAAATAGTACTATTGTGCCCTCTTCGACTGTTTCAGCTTATCTTCGGAAGATGCAAAGAGGCAGTCTAATTCAGCCTTTTGGTTGTATGATTGCTATTGATGATCAAAGTCTGACTGTCTTGGCGTATAGTGAAAACGCGCTTGAGATGCTTGATTTAGCTCCTCATGCTGTCCCTAATATTGAGCAGCAAGATGCTTTAACGTTTGGGACGGATATTCGTACACTTTTTAGATCTTCGAGTGCTTCTGCGCTTCAAAAAGCGGCGAATTTTCCGGAGGTTAATTTGTTAAACCCGATTTTGGTTCATTGTAAGAGTTCGGGTAAACCCTTTTACGCGATTTTGCATAGGAATGATGTTGGGTTGGTTATAGATTTAGAGCCTGTGAATCCTGCTGATGTGCCTGTTACAGCTGCTGGTGCTTTAACGTCGTATAAACTAGCTGCTAAAGCGATTTCTAGGTTACAGTCTTTGCAAAGTGGGAATACTTCAAGACTTTGTGATGTGTTGGTTAAAGAAGTGAGTGAGCTAACGGGTTATGATCGTGTTATGGTTTATAAGTTTCATGAAGATGAACATGGGGAAGTTATTGCTGAGTGTCGAAAGACTGACCTCGAGCCTTATCTTGGGTTGCATTACCCTGCTACTGATGTCCCACAAGCTTCACGGTTCCTTTTTATGAAAAATAAAGTTAGGATGATTTGTGATTGTTCAGCTGCACCAGTGAAAGTGATTCAATCAAAACATTTAGACCAGCCATTGAATCTTTCGGGGTCCGCTTTAAGAGCACCACATGGATGTCATGCACAATATATGTCAAATATGGGGTCAATTGCGTCGCTTGTGATGTCTGTGACAATCAATGATGGTGATGACGACGATGAGGATGTCAACGAGTCTGAAAGTGAGATAAATCAGCAACAAAAACAAAGGGGGAAAAGATTATGGGGTTTAGTTGTTTGTCATCATTCAAGTCCTCGGTTTGTGCCTTTTCCTTTAAGGTACGCTTGTGAGTTTCTGATTCAAGTTTTCAGTGTTCAAATAAGTAAAGAAGTTGAGTTGACTAGTCAACTACGAGAAAAACATATCTTGAAAACACAATCTGTGCTTTGTGATATGCTTTTGAGAGATGCTCCTATAGGGATCATGACTCAATCACCAAATGTAATGGACCTTGTTAAATGTGATGGGGCTGCACTGTACTACAAAAACAAGTTCTGGGTACTCGGGGTAACACCAACCGAGTATCAAATCAAAGATATAGCAAACTGGCTTCTAAAAGAACATGCTGGGAGTACAGGGTTAAGTACAGATAGTTTAGTGGATGCTGGATATCCAAACGCGTATGTTCTTGGAAAAGCCGTTTGCGGAATGGCGGCTGTTAAGATCACCTCTAAAGATTTTCTTTTTTGGTATCGGTCACATACTGCAAAAGAAGTGAAATGGGGTGGGGCCAAACATGATCCGGATGATAAAGATGATGTGAGAAAAATGCATCCGCGATCATCATTTAAGACGTTTTTGGAAGTTGTAAAATACCGGAGTTTACCATGGGAAGATGTGGAAATGGACGCTATTCATTCGTTACAGTTGATATTGAGAGGGTCTTTGCAAAATGATGATGAAATGAGTAATGATGATGATAAAAAGATTGTTAGTGTCCCTGCTGTCGATACGAGTATACAAAGGGTTGATGAATTGAGGGTTGTGGCTAATGAAATGGTTAGGCTTATTGAGACAGCTTCTGTTCCTATATTTGCTGTTGATGGCGACGGGAATATTAGTGGTTGGAATGATAAAATGGGTGAGCTTACTGGGCTGCCGTTGCTTGAAGCTGTTGGTGTCCCATTAGTTAATTTGGTTGTTGATGATTCGGTTAATGAAGTCAAAGCCATGCTCTCCTCTGCTTTACGAGGCATCGAGAATAAAGACGTTGAAATCAACTTTAAATGTTTCAAGAGTCAAGAAAGCAACAATCACATTACCCTTGTTACAAATGCTTGTTGTAGCCGTGATTTACAGGAAACAATCGTGGGGGTATGCTTTGTTGGACAAGATCTAACGGCTCAAAAGTTAATCACAGAAAAATATTCAAAAGTTAAAGGTGATTACACTAGTATAGTCCGCAGCCCATCTGCACTCATTCCTCCAATTTTCATGATGGACGAGTACGGGAAATGCTTAGAATGGAATGACGCCATGCAAAGATTAACCGGTTTGAGGAGGGAAGAAGCCAACAATAAGATGCTTTTAGGTGAAGTTTTCACCACTGGTAGTTTTGGTTGTCGGGTCAAAGGTGAAGATACTTTGACCCGACTAAGAATACTACTAAACGAGGTGATTTCAGGGTTGGATTCAGATAACTTGTTGTTTGGGTTTTTTGACCAAAATGGTAAGTATGTTGACGCATTACTTTCTGCTAACAAAAGGGTTGATTCAGAGGGAAAGATTACCGGTGTTCTGTGTTTTTTACATGTGACGAGCCCTGAGCTTCAACATGCTATGTTGGTGCAACGAATGTCTGAACAGGCCGCTTTGAATAGTCTTACGAAGGTGACTTACTTGCGTCATGAACTTAAGAGTGGATTGAATGGGATTAAGTGTATTGAAGATCTGATGCAATCGAGTGAGCTGGGTGGAGAGCAGAGACGCATCTTACGTAAAAGTCATTTGTGTCGAGAGCAAATAGCACAGATTGTTGACGATGCTGATATACAGAGCATTGAGGAATGTTATTTGGAAATGAAATGTGCTGAATTCAGACTCGGGGAGTCATTGGAGGTGGTTTTAAACCAAGTAACACTTTTGGGCCGTGAGCGGAAGGTAGAGGTCATTTATGATGTGCCCGAACAAGTGTTATCCTTGTCTTTATTTGGTGACAATTTGAGGCTTCAACAAGTCCTTTCAGACTTCTTGTCAAATGCTCTCAACTTCACTCCTGAAGTCGAAGGATCTTCAGTTTCTTTTCGTGCCACTCACAGGATGGAACACATAGGTGCAAAGATACAAGTTGCACATCTCGAATTCAGGATAACCCATCCGGCACCAGGGATACCCGAGAAGTTGGTTCAAGATATGTTTCACACCAACCGAGGTGCCTCAAGAGAAGGTCTTGGACTTTACATCAGTCAAAAGCTCGTAAAGACCATGAATGGGACTGTACAATATCTTAGAGAGGCTGAGAGAGCTTCTTTCATTGTCTTGATTGAGTTTCCTGTAGCGCTCTCGTTGACCGCTGACACCAAACGTTCAAAAAGAATCTGA | 3435 | 40.79 | MSSKSTTSRTKSNSSRLKHDARVVSQTPIDAKLHVEFEESDKKFDYSTSVDVNNASTSNSTIVPSSTVSAYLRKMQRGSLIQPFGCMIAIDDQSLTVLAYSENALEMLDLAPHAVPNIEQQDALTFGTDIRTLFRSSSASALQKAANFPEVNLLNPILVHCKSSGKPFYAILHRNDVGLVIDLEPVNPADVPVTAAGALTSYKLAAKAISRLQSLQSGNTSRLCDVLVKEVSELTGYDRVMVYKFHEDEHGEVIAECRKTDLEPYLGLHYPATDVPQASRFLFMKNKVRMICDCSAAPVKVIQSKHLDQPLNLSGSALRAPHGCHAQYMSNMGSIASLVMSVTINDGDDDDEDVNESESEINQQQKQRGKRLWGLVVCHHSSPRFVPFPLRYACEFLIQVFSVQISKEVELTSQLREKHILKTQSVLCDMLLRDAPIGIMTQSPNVMDLVKCDGAALYYKNKFWVLGVTPTEYQIKDIANWLLKEHAGSTGLSTDSLVDAGYPNAYVLGKAVCGMAAVKITSKDFLFWYRSHTAKEVKWGGAKHDPDDKDDVRKMHPRSSFKTFLEVVKYRSLPWEDVEMDAIHSLQLILRGSLQNDDEMSNDDDKKIVSVPAVDTSIQRVDELRVVANEMVRLIETASVPIFAVDGDGNISGWNDKMGELTGLPLLEAVGVPLVNLVVDDSVNEVKAMLSSALRGIENKDVEINFKCFKSQESNNHITLVTNACCSRDLQETIVGVCFVGQDLTAQKLITEKYSKVKGDYTSIVRSPSALIPPIFMMDEYGKCLEWNDAMQRLTGLRREEANNKMLLGEVFTTGSFGCRVKGEDTLTRLRILLNEVISGLDSDNLLFGFFDQNGKYVDALLSANKRVDSEGKITGVLCFLHVTSPELQHAMLVQRMSEQAALNSLTKVTYLRHELKSGLNGIKCIEDLMQSSELGGEQRRILRKSHLCREQIAQIVDDADIQSIEECYLEMKCAEFRLGESLEVVLNQVTLLGRERKVEVIYDVPEQVLSLSLFGDNLRLQQVLSDFLSNALNFTPEVEGSSVSFRATHRMEHIGAKIQVAHLEFRITHPAPGIPEKLVQDMFHTNRGASREGLGLYISQKLVKTMNGTVQYLREAERASFIVLIEFPVALSLTADTKRSKRI | 1144 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aann4g01268 | 1144 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 618 | 740 | IPR035965 | - | |
| Aann4g01268 | 1144 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 742 | 762 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 524 | 543 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 557 | 575 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 630 | 646 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 649 | 664 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 439 | 459 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | PRINTS | Phytochrome signature | 722 | 739 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | SMART | gaf-1 | 219 | 419 | IPR003018 | GO:0005515(InterPro) | |
| Aann4g01268 | 1144 | Pfam | Phytochrome region | 422 | 597 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Aann4g01268 | 1144 | Pfam | PAS fold | 70 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Aann4g01268 | 1144 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 774 | 879 | IPR035965 | - | |
| Aann4g01268 | 1144 | CDD | PAS | 771 | 882 | IPR000014 | - | |
| Aann4g01268 | 1144 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1016 | 1129 | IPR003594 | - | |
| Aann4g01268 | 1144 | CDD | HATPase-Phy-like | 1015 | 1128 | IPR044767 | - | |
| Aann4g01268 | 1144 | Pfam | GAF domain | 221 | 408 | IPR003018 | GO:0005515(InterPro) | |
| Aann4g01268 | 1144 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 399 | IPR016132 | - | |
| Aann4g01268 | 1144 | ProSiteProfiles | PAS repeat profile. | 760 | 812 | IPR000014 | - | |
| Aann4g01268 | 1144 | Gene3D | - | 946 | 1124 | IPR036890 | - | |
| Aann4g01268 | 1144 | FunFam | Phytochrome | 414 | 546 | - | - | |
| Aann4g01268 | 1144 | Gene3D | - | 414 | 587 | IPR043150 | - | |
| Aann4g01268 | 1144 | PIRSF | Phytochrome-conventional | 1 | 1139 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Aann4g01268 | 1144 | CDD | PAS | 638 | 704 | IPR000014 | - | |
| Aann4g01268 | 1144 | ProSiteProfiles | Histidine kinase domain profile. | 911 | 1132 | IPR005467 | - | |
| Aann4g01268 | 1144 | SMART | HKATPase-4 | 1016 | 1132 | IPR003594 | - | |
| Aann4g01268 | 1144 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Aann4g01268 | 1144 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 978 | 1129 | IPR036890 | - | |
| Aann4g01268 | 1144 | FunFam | Phytochrome | 969 | 1130 | - | - | |
| Aann4g01268 | 1144 | SUPERFAMILY | GAF domain-like | 201 | 406 | - | - | |
| Aann4g01268 | 1144 | ProSiteProfiles | PAS repeat profile. | 627 | 697 | IPR000014 | - | |
| Aann4g01268 | 1144 | SUPERFAMILY | GAF domain-like | 417 | 594 | - | - | |
| Aann4g01268 | 1144 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Aann4g01268 | 1144 | Gene3D | PAS domain | 773 | 888 | - | - | |
| Aann4g01268 | 1144 | PANTHER | OS08G0260000 PROTEIN | 1 | 1007 | - | - | |
| Aann4g01268 | 1144 | NCBIfam | PAS domain S-box protein | 634 | 752 | IPR000014 | - | |
| Aann4g01268 | 1144 | SMART | pas-2 | 629 | 695 | IPR000014 | - | |
| Aann4g01268 | 1144 | SMART | pas-2 | 759 | 829 | IPR000014 | - | |
| Aann4g01268 | 1144 | Gene3D | - | 200 | 570 | IPR029016 | - | |
| Aann4g01268 | 1144 | Pfam | PAS fold | 767 | 882 | IPR013767 | GO:0006355(InterPro) | |
| Aann4g01268 | 1144 | Pfam | PAS fold | 630 | 743 | IPR013767 | GO:0006355(InterPro) | |
| Aann4g01268 | 1144 | Gene3D | PAS domain | 79 | 322 | - | - | |
| Aann4g01268 | 1144 | Gene3D | PAS domain | 617 | 758 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aann4g01268 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Aann | Aann-Chr4:11320824 | Aann4g01268 | Aann-Chr4:67104245 | dispersed | |
| Aann | Aann-Chr4:67104245 | Aann6g00883 | Aann-Chr6:47408107 | dispersed | |
| Aann | Aann-Chr4:67104245 | Aann5g03350 | Aann-Chr5:111294635 | transposed | |
| Aann | Aann-Chr4:67104245 | Aann7g03995 | Aann-Chr7:120818681 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Aann1g00673 | . | 23 | 1154 | Histidine Kinase gene family | AT2G18790 | 76.19 | 0.0 | 1827.0 | |
| Aann1g07061 | . | 75 | 1118 | Histidine Kinase gene family | AT2G47430 | 36.029 | 0.0 | 565.0 | |
| Aann4g00136 | . | 2 | 1120 | Histidine Kinase gene family | AT1G09570 | 74.531 | 0.0 | 1801.0 | |
| Aann4g01268 | . | 2 | 1110 | Histidine Kinase gene family | AT5G35840 | 60.904 | 0.0 | 1455.0 | |
| Aann4g02404 | . | 2 | 1096 | Histidine Kinase gene family | AT4G18130 | 61.511 | 0.0 | 1416.0 | |
| Aann5g03326 | . | 5 | 444 | Histidine Kinase gene family | AT5G10720 | 61.937 | 0.0 | 558.0 | |
| Aann5g03350 | ACH | 1 | 827 | Histidine Kinase gene family | AT5G10720 | 58.274 | 0.0 | 935.0 | |
| Aann5g03509 | . | 129 | 444 | Histidine Kinase gene family | AT5G10720 | 68.354 | 6.09e-146 | 436.0 | |
| Aann5g03510 | . | 5 | 65 | Histidine Kinase gene family | AT5G10720 | 47.541 | 1.79e-10 | 55.5 | |
| Aann5g05100 | . | 60 | 1056 | Histidine Kinase gene family | AT2G01830 | 67.396 | 0.0 | 1326.0 | |
| Aann6g00883 | . | 53 | 1150 | Histidine Kinase gene family | AT2G18790 | 71.364 | 0.0 | 1657.0 | |
| Aann7g01377 | . | 27 | 1197 | Histidine Kinase gene family | AT2G17820 | 63.445 | 0.0 | 1486.0 | |
| Aann7g03995 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 60.518 | 0.0 | 1073.0 |