AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01280 ATGGAATTGAACATAGAAGAAGCGTTTAGAGCGAAAGAGCATGCAGAAAAGCTATTTATGGTAAATGATTATATGGGTGCGAAGCAGTACGCGATAAAGGCTCAAGCTTTGTGCCCGCAGCTCGAGGGTGTGTCTCAAATGGTGGCTACTTTTGAAATATACGCTGCTGCTCAGACGAAAATAAATGGTGAAATTGATTTGTATTCGGTACTTGGATTAGGCCCGTCTGCAGAGAAATCTGTATTGAAGAAACAATACAGAAAGATGGCGGTTCTTCTTCATCCGGATAAGAACAAGACAATGGGAGCTGATGAGGCGTTTAAGCTTGTATCAGAAGCATGGAGTGTGTTATCGGATAATACTAAAAGGAATAATTATGATGTTAGAAGAAATAAGCAGTTATCAGCATCAGTATCTCGACTTGATACTTTCTGGACTGTTTGCACTACGTGTCGTGTTCAGTATGAATATCTTAGAAAATACGTGAATAAAAGACTTTCGTGCAAGAATTGTCGTGGGGTTTTTGTAGCTGTTGAAACGGGGTCTGCTCCTGTTACTTATTGTCCTTGGTCTTATACGAGTGAAAATAACGGTTATGCAAACCATTCGTATAATACTAATGCCACTACATATATACCAAATTCATCAGTATGTTTCACAGGTAATGGGTCGTCTACTTATCCACCTGCACACACATCCGAATATGGGAGTAATGCAACCTTCCAGTGGAACACTTCTACAGGTGCTTCTGATCATAGTGTTGTTCATAAGAGGAATAAAAGACCACAATCCCAGGTGGGTCCCGGTGAAATCAAGGTTGTTAAGCTTGGTAGGCCTCGAAAAAAGAGAAAGATTGAACCGGGAAATGGAACTCAACCCACAAACGGTGAAATGTTATTCAAAACCGAGCCTGATGTGGCAGCGTCTAATGGGCATATTGTCAATGAGACTTCTGTCAAGTGGTATCCTGCTCCACCTACTATTGATATTAGGAAGTTGTTAATTGACAAAGCGAGATCAGTCATTCGGGTTAAGTTAGAAGAAATAAAATTAGCTTCAAAAAACGAGAAAGCGATGAAAAAAACGGATCCAGTTCCAATAACCGTCCCAGACCCAGATTTCCATGATTTTGATAGGGATCGATTGGAGGAAGTATTCAAACCGAAGCAAATATGGGCTATATATGATGAAGAAGACGGTATGCCTCGTTTATATTGTCTAATCCGTGAAGTTATCTCTGTGAAGCCGTTTCAGCTCTATATTAGTTACTTGAACTCAAAAACCGACACCGAGTTTGGTTGTGTAAAATGGATCGAATCGGGGTTTACTAAATCATGTGGAAACTTCCGTGTTTTCCATTCTGATATCGTTGACCAAGTCAACATCTTTTCTCATCTTTTAGGACGAGAAAAAGCTGGTAGAGGAGGTTGTGTTAAAATATACCCTAAAAGTGGTGACGTATGGGCAGTTTATCGAAACTGGTCGGTTAACTGGAACCGCAAGACACCAGAAGAAGTGAGGCATCAGTATGAAATGGTTGAAATTCTTGAAGATTATTCTGAAGAGCTTGGAATACGTGTAACTCCTTTGGTTAAGTTAAATGGTTATAAAACAGTTTATCAAAGGGACGAGAAAAAGAATGGGACCCGCTGGATACCGAGAAGGGAAATGGTAAGATTTTCACATCAAGTTCCGTCTTGTTTACTTAAAGGTCAAGGACTTAACTTGCCTGACGGTTGCTGGGATCTTGACCCTGCTGCAACCCCTGAAGAACTTCTTCAGGCTGCAGTTGATGAAGAAAAACCAGATCTTAATGTACAAAGTACAAACATAAACATGTAG 1842 40.28 MELNIEEAFRAKEHAEKLFMVNDYMGAKQYAIKAQALCPQLEGVSQMVATFEIYAAAQTKINGEIDLYSVLGLGPSAEKSVLKKQYRKMAVLLHPDKNKTMGADEAFKLVSEAWSVLSDNTKRNNYDVRRNKQLSASVSRLDTFWTVCTTCRVQYEYLRKYVNKRLSCKNCRGVFVAVETGSAPVTYCPWSYTSENNGYANHSYNTNATTYIPNSSVCFTGNGSSTYPPAHTSEYGSNATFQWNTSTGASDHSVVHKRNKRPQSQVGPGEIKVVKLGRPRKKRKIEPGNGTQPTNGEMLFKTEPDVAASNGHIVNETSVKWYPAPPTIDIRKLLIDKARSVIRVKLEEIKLASKNEKAMKKTDPVPITVPDPDFHDFDRDRLEEVFKPKQIWAIYDEEDGMPRLYCLIREVISVKPFQLYISYLNSKTDTEFGCVKWIESGFTKSCGNFRVFHSDIVDQVNIFSHLLGREKAGRGGCVKIYPKSGDVWAVYRNWSVNWNRKTPEEVRHQYEMVEILEDYSEELGIRVTPLVKLNGYKTVYQRDEKKNGTRWIPRREMVRFSHQVPSCLLKGQGLNLPDGCWDLDPAATPEELLQAAVDEEKPDLNVQSTNINM 613
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01280 613 Pfam DnaJ domain 66 127 IPR001623 -
Aann4g01280 613 CDD DnaJ 66 119 IPR001623 -
Aann4g01280 613 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Aann4g01280 613 MobiDBLite consensus disorder prediction 249 268 - -
Aann4g01280 613 Gene3D DnaJ domain 54 146 IPR036869 -
Aann4g01280 613 PANTHER BNAC03G44070D PROTEIN 1 588 - -
Aann4g01280 613 PRINTS DnaJ domain signature 102 122 IPR001623 -
Aann4g01280 613 PRINTS DnaJ domain signature 86 101 IPR001623 -
Aann4g01280 613 PRINTS DnaJ domain signature 68 86 IPR001623 -
Aann4g01280 613 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Aann4g01280 613 SMART dnaj-3 65 122 IPR001623 -
Aann4g01280 613 Pfam Domain of unknown function (DUF3444) 366 572 IPR024593 -
Aann4g01280 613 SUPERFAMILY Chaperone J-domain 62 131 IPR036869 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01280 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
551 Aann1g03570 Aann4g01280
1645 Aann2g04084 Aann4g01280
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr3:131129347 Aann4g01280 Aann-Chr4:67239796 dispersed
Aann Aann-Chr4:67239796 Aann5g04445 Aann-Chr5:135867022 dispersed
Aann Aann-Chr1:215539787 Aann4g01280 Aann-Chr4:67239796 transposed
Aann Aann-Chr3:27084999 Aann4g01280 Aann-Chr4:67239796 transposed
Aann Aann-Chr5:107601251 Aann4g01280 Aann-Chr4:67239796 transposed
Aann Aann-Chr8:106376555 Aann4g01280 Aann-Chr4:67239796 transposed
Aann Aann-Chr1:86267789 Aann4g01280 Aann-Chr4:67239796 wgd
Aann Aann-Chr2:113254194 Aann4g01280 Aann-Chr4:67239796 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g03570 ACH 10 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.503 1.07e-27 112.0
Aann1g06485 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.545 1.37e-30 121.0
Aann1g06773 . 7 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.299 6.33e-26 103.0
Aann1g06774 . 7 149 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.462 1.44e-24 100.0
Aann1g06776 ACH 17 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.0 3.58e-16 77.8
Aann1g07308 . 7 310 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.748 1.47e-92 276.0
Aann2g01637 . 7 145 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.446 2.24e-27 106.0
Aann2g02826 ACH 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.313 8.28e-10 57.4
Aann2g04084 ACH 7 308 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.412 2.34e-30 119.0
Aann3g00419 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.569 2.89e-27 111.0
Aann3g00471 . 85 173 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.858 4.02e-12 59.7
Aann3g03095 ACH 7 141 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.0 3.95e-24 101.0
Aann3g05599 . 32 141 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.909 2.61e-10 57.8
Aann4g00586 . 17 272 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 34.857 3.76e-61 202.0
Aann4g00587 . 21 164 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 49.068 7.04e-39 148.0
Aann4g00588 . 8 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.617 4.50e-34 130.0
Aann4g01280 ACH 7 306 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.114 5.28e-31 121.0
Aann5g01033 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.641 4.58e-10 59.7
Aann5g01094 . 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.394 2.26e-25 105.0
Aann5g03058 . 10 204 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.744 2.92e-28 106.0
Aann5g03232 . 61 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 41.026 2.69e-11 60.1
Aann5g04445 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.641 2.87e-30 119.0
Aann6g01183 ACH 58 138 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.922 7.17e-06 47.4
Aann7g01105 . 5 224 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.87 2.18e-27 107.0
Aann7g03545 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.386 2.61e-22 96.3
Aann8g01068 . 63 108 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 41.304 2.37e-08 45.8
Aann8g02500 . 8 212 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.479 5.98e-59 187.0