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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01295 ATGGATCTTTCAAGATACTATCATTCAATGAATAAAAATTGCCAGAAGCCAGTTCGTAGTTCGGGTGAGATCCATGTGATTGTGGGACCCATGTTTGCTGGTAAAACAACTGCTCTTCTTCGTAGGATTAAATCTGAAGCAACTAATGGAAGGAATATAGCAATGATAAAGTCAAGCAAGGATAATCGATATGCAATAGATTCAGTTGTGACACATGATGGAACAAAGTATCCTTGTTGGGCACTTCCTGATTTGCTGTCTTTTAAACGAAGACTAGGGGAAGAAGCTTATGAAAAGCTGGATGTTATTGGGATTGATGAGGCACAATTTTTTGATGATCTCTATGACTTCTGTTCTAAAGCTGCTGATCATGATGGTAAAACTGTCATAATTGCTGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGTCCGGTTCTTGATATAGTACCACTTGCTGATACCATAACCAAGTTGACTGCTCGATGTGAAGTATGTGGTAAACGAGCCCATTTCACTTTTAGGAAGACCAACGAGACAAAAACAGAACTTATTGGCGGGGCAGATATGTATATGCCTGTTTGTCGTCAACATTATGTTAGTGGACAAACGGTGATTAAAAACACTAGACAAACAACCTCAACTACCACTGCTTAA 657 38.96 MDLSRYYHSMNKNCQKPVRSSGEIHVIVGPMFAGKTTALLRRIKSEATNGRNIAMIKSSKDNRYAIDSVVTHDGTKYPCWALPDLLSFKRRLGEEAYEKLDVIGIDEAQFFDDLYDFCSKAADHDGKTVIIAGLDGDYLRRNFGPVLDIVPLADTITKLTARCEVCGKRAHFTFRKTNETKTELIGGADMYMPVCRQHYVSGQTVIKNTRQTTSTTTA 218
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01295 218 Gene3D - 160 201 - -
Aann4g01295 218 Pfam Thymidine kinase 22 199 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Aann4g01295 218 Gene3D - 15 159 IPR027417 -
Aann4g01295 218 PANTHER THYMIDINE KINASE 15 213 IPR001267 GO:0004797(PANTHER)|GO:0004797(InterPro)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Aann4g01295 218 ProSitePatterns Thymidine kinase cellular-type signature. 186 199 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Aann4g01295 218 FunFam Thymidine kinase 160 202 - -
Aann4g01295 218 FunFam Thymidine kinase 18 159 - -
Aann4g01295 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 160 IPR027417 -
Aann4g01295 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 202 - -
Aann4g01295 218 PIRSF Tdk 19 214 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01295 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:67465838 Aann6g04735 Aann-Chr6:143216392 dispersed