AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01301 ATGAGTAAAATCTTAGCTATTCTTTTTTGCATCTTGTTAACAAATTTATCAGTTTCGTACGCTCAAAACTGTAATAGTTTTGCTTTTTCTAGTAACGCTGTATACGCAACATGCGTCACGTTACCAGTTTTAAACTCACATCTTCACTGGAACTACCATGCTAATGGTACAGTTGACGTGGCATTTCGTCACACAGGGTCCACCACAAACCAATGGGTTGCATGGGCCTTAAATTTTCAACGGCCAGGTATGCTTGGTGCACAAGCACTTGTAGCATTAACAAGCTCAAACGGGTCAGTTCAAGCTTATACTAGTGCTGTAGCTGGTTATGATACTAGTTTACAACCGAGTTCTTTGAGCTTTGAGGTGCCCATGATTAGAAGTGAGAGAGTTAATGGAGATGTGATTATTTATGCAACGTTGGTTTTGCCACGTGGAGGGACGAGATTTAATCAAGTGTGGCAAGTGGGTCCGGTTACTAATGGAGCTCCGAGTATTCATGGGTTGGGTTCGGATAATAGGAACTCGATTGGGTCGGTTGACTTTAGTACTGGTCAAACTGCTGCTGGTGGTAATGTTGGTGGATCACGGATGCGAAGGAGGAATACTCATGGAGTATTAAACGCTGTTAGTTGGGGAGTATTGATGCCTATGGGAGCTATGACAGCAAGATATTTAAAGGTGTTTAAAGTAGCTAATCCAGCCTGGTTCTATATCCATGCTGCTTGCCAAACATCAGCCTATGCCGTAGGTGTAGCGGGATGGGCCACTGGACTCAAGCTCGGCAGTGACTCAGCCGGAATCACTCACACGAGCCATCGCAACATTGGAATCATCCTCTTTACACTTGGAACACTTCAGGTTTTTGCTTTGCTGTTGAGGCCTAAGCCAGAAAACAAGTACAGATTTTATTGGAACATATACCACCACGGCCTTGGATACTCGGTGATCATCTTGAGCATTATCAACGTCTACGAGGGACTTGATATCTTGGACCCTGAGAAGAAGTGGAAGCACGCGTACACCGGCATACTTATCACTTTGGGGGTAATCACGGTTCTGCTAGAAGCTTTGACATGGTTCATTGTTTTGAAGAGGAAGAAGGAAGACAAAAGGACACATGCAGGGACTAATGGTTCATATGGAGCCAATGGACATGCGTAG 1164 44.42 MSKILAILFCILLTNLSVSYAQNCNSFAFSSNAVYATCVTLPVLNSHLHWNYHANGTVDVAFRHTGSTTNQWVAWALNFQRPGMLGAQALVALTSSNGSVQAYTSAVAGYDTSLQPSSLSFEVPMIRSERVNGDVIIYATLVLPRGGTRFNQVWQVGPVTNGAPSIHGLGSDNRNSIGSVDFSTGQTAAGGNVGGSRMRRRNTHGVLNAVSWGVLMPMGAMTARYLKVFKVANPAWFYIHAACQTSAYAVGVAGWATGLKLGSDSAGITHTSHRNIGIILFTLGTLQVFALLLRPKPENKYRFYWNIYHHGLGYSVIILSIINVYEGLDILDPEKKWKHAYTGILITLGVITVLLEALTWFIVLKRKKEDKRTHAGTNGSYGANGHA 387
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01301 387 CDD DOMON-CIL1-like 35 184 IPR045265 -
Aann4g01301 387 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
Aann4g01301 387 PIRSF UCP037471 1 387 IPR017214 -
Aann4g01301 387 SMART 561-7 203 328 IPR006593 -
Aann4g01301 387 CDD Cyt-b561-FRRS1-like 179 357 - -
Aann4g01301 387 Gene3D - 183 374 - -
Aann4g01301 387 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 6 368 - -
Aann4g01301 387 FunFam Cytochrome b561 and DOMON domain-containing protein 182 372 - -
Aann4g01301 387 Pfam Protein of unknown function (DUF568) 84 182 IPR045265 -
Aann4g01301 387 ProSiteProfiles Cytochrome b561 domain profile. 163 364 IPR006593 -
Aann4g01301 387 Pfam Eukaryotic cytochrome b561 204 328 IPR006593 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01301 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
1643 Aann2g04073 Aann4g01301
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:67569894 Aann8g01587 Aann-Chr8:63267463 dispersed
Aann Aann-Chr1:17890056 Aann4g01301 Aann-Chr4:67569894 transposed
Aann Aann-Chr4:119697490 Aann4g01301 Aann-Chr4:67569894 transposed
Aann Aann-Chr2:112887787 Aann4g01301 Aann-Chr4:67569894 wgd