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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01304 ATGTCGTTGACCGTAGAAGCTGTTTCTGGTTGCTCCAAGGACATGGGGTTCGAAGAAAACAAGGAGCAAGGCAAAGAAAGTATCAAAAGAAGTGGGAGTGAATCTTCATTGTGTGAAAGTGAAAATGAAGGAGATGAAGTTGAAGATATTAAAATTGAATTGGGTCCTCAATGCACCCTTAAAGATCAACTTGAGAAGGATAAGGATGATGAGAGTCTGAGAAAGTGGAAAGAACAACTACTTGGGAATGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTGAAGATCCTCAGTCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCACAGATGGAAAACCTAAAGGCACATGGTTTACTCTGAAAGAAGGTTCTCGTTACAGCCTCAGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCCGGTTTAAAGTACACCAACAATGTATGGAAAACTGGTGTCAAGGTGGATAACGCGAAACAGATGCTTGGTACTTTTAGCCCACAGCAAGAAACATACACTTATGATATGCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCCAAAACGAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATTAGCTATACCTTTGACATCCGAAAAGATTGGGCGAGTGGTGAATAG 696 40.37 MSLTVEAVSGCSKDMGFEENKEQGKESIKRSGSESSLCESENEGDEVEDIKIELGPQCTLKDQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPTDGKPKGTWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNAKQMLGTFSPQQETYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEISYTFDIRKDWASGE 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01304 231 Pfam RHO protein GDP dissociation inhibitor 40 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aann4g01304 231 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 229 IPR024792 -
Aann4g01304 231 FunFam Rho GDP-dissociation inhibitor 1 50 229 - -
Aann4g01304 231 SUPERFAMILY E set domains 41 227 IPR014756 -
Aann4g01304 231 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aann4g01304 231 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aann4g01304 231 PRINTS RHO protein GDP dissociation inhibitor signature 206 223 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aann4g01304 231 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Aann4g01304 231 MobiDBLite consensus disorder prediction 15 29 - -
Aann4g01304 231 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 227 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Aann4g01304 231 MobiDBLite consensus disorder prediction 1 49 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01304 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
542 Aann1g03526 Aann4g01304
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:75405307 Aann4g01304 Aann-Chr4:67727561 dispersed
Aann Aann-Chr4:67727561 Aann8g02805 Aann-Chr8:134457857 dispersed
Aann Aann-Chr4:162931215 Aann4g01304 Aann-Chr4:67727561 transposed
Aann Aann-Chr1:85825414 Aann4g01304 Aann-Chr4:67727561 wgd