AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01320 ATGCCACCATTAAAAACCATATATCTAACCATCATATTCATTTTAATAATCCCATACCCAACAACAACTGGTGATCAATCCTATATCTCAATCTTAATAACCCAAAAGGGTCTTAATTTCACCAAAGATTTACTCATATCAAAAGCAATATCATCACTTACACCAACACCAATACCTGAAATTGTTAAAAATGTTAAGATACCTTTGATTGGTAAAGTGCATGTTGTTCTTAAGGATATTAGTATTAATGGGGTTGAAGTTGGGTCATCTGATGTTGTGCCTAGTGTTGGTGGTGTTGTGATTGTTGGTAATGGTGTTAGTTGTGAGTTGGAGGTGAAGTGGCATTATAGTTATGGGACTTGGGTTGGTCCGGTTTCGGTTTCGGATAGTGGGACTGCTTCTATTAAGGTTGATGGCATGGAAATCAGTGTAACACTAGACATGGTTAATAAAGAAGGATCTATGAAACTTTCCATCGTGGAATGTAATTGTCATATAAATGATATCTCCATAGACTTGGATGGAGGAGCATCTTGGCTCTATCAAGGGATTGTGGATGCTTTTGAAGATGAAATAGTCTCAGCAGTAGAAAAAGCAATTACCAAGAAACTGAAAGCCGGAATTTCACACCTTGAATCAATTTTACAAACTCTTCCGAAACAAATTCCAGTGGATGATACTGCCTCATTAAATGTTACATTTGTTAACAACCCTTATATGAGCGACACTTCACTAGGCGTTGAGATAAATGGGTTGTTTGTAGAAAATAAAACCCACGCACATTCGTACCACAATGGTTTGCAGCCACCAGTTTCATGTTCAGAATCTTCAAAGATGATTGGAATTGCCTTAGATGAAGCTGTTTTTAAATCTGCATCTGCCTTATACTATAACGCCAAGTTTATGCACTGGATTGTGGATAAAATTCCCCAACAATCTATATTGAACACAGCAGGATGGAGATTTATTGTGCCTCAACTTTACAAGAAATACCCGAATGCTGATATGAATTTGGACATTACACTGTCTGATCCTCCGGTTATGCAGATATCATGGCAGAAAATTGGTGCAATCGTCTATGCAGACTTAATTATAGATGTTCTTGAAGGCGATGACACAATACCTGTTGCTTGTATCTCACTGGTAATTGCTGGCACGGGTTCAGTTGAAATTGTAGGAAACAACCTTGCGAGTCATGTGAATTTGGATGATTTCACCATGTCGTTGAAATGGAGCAAGATTGGCACCTTGCACATGTTTCTTATTCAGCCAGTGATGTGGACGATCATTGAAACGGTTTTCTTGCCATATGTGAATGCACAACTTGGGGTTGGCTTCCCGTTGCCTATAATACGTGGTTTTATGCTACAAAATGCTGAGATAATACCCTCAGATTCAAGAATCACGGTCTGCAGTGACGTTGCTTATGAGGAATATGTTGATAATAGCCGATCCCTCGTTTACACTTCATGA 1473 38.56 MPPLKTIYLTIIFILIIPYPTTTGDQSYISILITQKGLNFTKDLLISKAISSLTPTPIPEIVKNVKIPLIGKVHVVLKDISINGVEVGSSDVVPSVGGVVIVGNGVSCELEVKWHYSYGTWVGPVSVSDSGTASIKVDGMEISVTLDMVNKEGSMKLSIVECNCHINDISIDLDGGASWLYQGIVDAFEDEIVSAVEKAITKKLKAGISHLESILQTLPKQIPVDDTASLNVTFVNNPYMSDTSLGVEINGLFVENKTHAHSYHNGLQPPVSCSESSKMIGIALDEAVFKSASALYYNAKFMHWIVDKIPQQSILNTAGWRFIVPQLYKKYPNADMNLDITLSDPPVMQISWQKIGAIVYADLIIDVLEGDDTIPVACISLVIAGTGSVEIVGNNLASHVNLDDFTMSLKWSKIGTLHMFLIQPVMWTIIETVFLPYVNAQLGVGFPLPIIRGFMLQNAEIIPSDSRITVCSDVAYEEYVDNSRSLVYTS 490
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01320 490 CDD BPI2 279 474 - -
Aann4g01320 490 SMART bpi2-2 274 472 IPR001124 GO:0008289(InterPro)
Aann4g01320 490 SMART bpi1-3 33 258 IPR017942 GO:0008289(InterPro)
Aann4g01320 490 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 476 IPR017943 GO:0008289(InterPro)
Aann4g01320 490 PANTHER OS06G0309200 PROTEIN 11 484 IPR045897 -
Aann4g01320 490 FunFam phospholipid transfer protein-like 36 216 - -
Aann4g01320 490 Pfam LBP - BPI - CETP family, C-terminal domain 260 476 IPR001124 GO:0008289(InterPro)
Aann4g01320 490 PIRSF Lipid-binding-protein 6 481 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Aann4g01320 490 Gene3D - 31 462 - -
Aann4g01320 490 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 30 241 IPR017943 GO:0008289(InterPro)
Aann4g01320 490 Gene3D - 36 216 - -
Aann4g01320 490 Pfam LBP - BPI - CETP family, N-terminal domain 37 211 IPR017942 GO:0008289(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01320 K05399 lipopolysaccharide-binding protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:68072104 Aann5g00696 Aann-Chr5:18809209 dispersed