AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01323 ATGGAGCAGGAAAGAAATGACCATGAAATATCAGTTACTTGGAGAGGGAACAAGTATGTTGTGACTATGGATTTAAGTGCCACTTTAGAAGAATTGGGGCGTGAGTTGCAGAAACTAACTACAGTGAAAGCAGATACTTTGAAGCTCATTGTCCAGTCCCGGAAAGCGTCTAAATTGTTGTCGCCTTTCTCTGATGAGCACTCTCGTCTCACTTTGCAGGAAACATCCATTGAGGGGAAACCTATACGGATGATGGGAGTGCCACAGGAAGAGGTTGATCAAATTCTTAAAGGTGCAAAGACGGACATGAGGATTGCTGGATTTGATGAAGAGGAGAAGCGGATGAGACAAAGAATGTCAAATGGGTTTGATGCCCCGTTGCAGCTTCCGTCTGGAAATTATGTTTTTGCTGATTTTAAAGCACTTGAGCTTCCAGGGATCGAGTTGTATCCTCCACCGTCAGAAGCGTTGAGACTAATGCACACACTTGCTGCAGACAAAGGAATTGTCGCTATTATGAATAAGCATAAATGGCGTGTGGGAATCATGACTGAGATGGCTCCGGAGGGTTATGTTGGCGTAAGTCCCGTGTGCATCCTTGGTTTAAACAAGAATCAGGGCGAGGAGATATCTTTGCGTCTTCGAACTGATGATCTAAAGGGTTTCAGAAAATATCAGAGCATTAAAAAGACTCTCCTGCATGAACTTGCCCATATGGTATTCTCTGAACATGATGCGAAATTCTATGCTCTAGATAGTCAGCTTAACAAGGAGGCCGCTGCTCTAGACTGGACTAGATCTACTGGTCATACCTTAAGCGGGTCCCAGAAGACGCAACAATATGGATATGAGTTCCATGCTACTGATAATCATAATAGTAGTAGTAGTTTGTCTCATAAACTTGGTGGAAGCCAATCGTCCAGCTCACTGGCTAATGCACGAGCATCTTCTGTTGCTGCTGCTTACCAGCGTTTAGTAATTGCATCCACCAACCCATCAACAACACCTGAATCACGTAAAGAACCCGACCCTGATGATTCTATGGATGTGACTATGAATAAGCCAGAAGCTATTAACATTAGTGAAGAACAAACTTACGAACCTGACCCTGATGACCAGGAAGAAATGCTAAACAACAAAAACGAGCCCGACCCAGATGACAGTATAAACAGTGAAGCTATGGAATCTGAACCATGTGGAGAATCAACCAAAAATATTATTACTCCTGAGCTTAATCATGGTAAAACTGAAGAAAAAAATGAACCTGATCCTGATGATGGTATCTTAGAGGATGAAGAACTGCAGAGGATTCAAGATCCTGTTATGATTGCTTGTAATCGTTTGAAGAAGTCCATTGAGACGCTGCAATCTGAAGTCAGTCCTGCAGAGGCTGCCATGGTTTTTCAGACTCTTGTTAAGATAGTCAAGAACGTTATTGAACACCCTAATGAAATAAAGTTCAAGAAATTACGCAAGGCTAATCCAGTAATCCAGAAGAACATTGCAAGTTATAATGCTGCAATGGAGATATTGTTCTTGATTGGTTTTTGTGAAGATGTTGTCCAAGATGAGATTGGGCGAGCGGAAGCTTATTTGGTGTTGAAGAGGAACGACCCAGGCTTGTTGTGGTTAGCAAAATCCTCTTTGGAGACATGCATTGCTTTCTAA 1668 42.39 MEQERNDHEISVTWRGNKYVVTMDLSATLEELGRELQKLTTVKADTLKLIVQSRKASKLLSPFSDEHSRLTLQETSIEGKPIRMMGVPQEEVDQILKGAKTDMRIAGFDEEEKRMRQRMSNGFDAPLQLPSGNYVFADFKALELPGIELYPPPSEALRLMHTLAADKGIVAIMNKHKWRVGIMTEMAPEGYVGVSPVCILGLNKNQGEEISLRLRTDDLKGFRKYQSIKKTLLHELAHMVFSEHDAKFYALDSQLNKEAAALDWTRSTGHTLSGSQKTQQYGYEFHATDNHNSSSSLSHKLGGSQSSSSLANARASSVAAAYQRLVIASTNPSTTPESRKEPDPDDSMDVTMNKPEAINISEEQTYEPDPDDQEEMLNNKNEPDPDDSINSEAMESEPCGESTKNIITPELNHGKTEEKNEPDPDDGILEDEELQRIQDPVMIACNRLKKSIETLQSEVSPAEAAMVFQTLVKIVKNVIEHPNEIKFKKLRKANPVIQKNIASYNAAMEILFLIGFCEDVVQDEIGRAEAYLVLKRNDPGLLWLAKSSLETCIAF 555
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01323 555 MobiDBLite consensus disorder prediction 373 387 - -
Aann4g01323 555 ProSiteProfiles WLM domain profile. 127 326 IPR013536 -
Aann4g01323 555 MobiDBLite consensus disorder prediction 395 410 - -
Aann4g01323 555 CDD PUB-WLM 452 551 - -
Aann4g01323 555 MobiDBLite consensus disorder prediction 287 308 - -
Aann4g01323 555 SUPERFAMILY PUG domain-like 441 553 IPR036339 -
Aann4g01323 555 Pfam PUB domain 467 540 IPR018997 -
Aann4g01323 555 PANTHER ZINC METALLOPROTEINASE-LIKE PROTEIN 1 404 - -
Aann4g01323 555 SMART PGNneu 466 535 - -
Aann4g01323 555 Pfam WLM domain 148 325 IPR013536 -
Aann4g01323 555 MobiDBLite consensus disorder prediction 328 428 - -
Aann4g01323 555 Gene3D - 3 92 - -
Aann4g01323 555 Gene3D - 448 549 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01323 K22685 DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:17396615 Aann4g01323 Aann-Chr4:68137460 dispersed