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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01334 ATGAAATTCAACAACAACAACAACCAAGAGGAACATGACACGTGTCGAAGTATCGAAGTAGTGAGTGAGAATTGCAATGGTGAGGGTGAGGAGGTGGTGTATACGCCTCCGTTGAATTTCTCGATGGTTGATAATGGAATTTATCGTTCTGGTTTCCCTGATACCCTCAATTTCTCCTTTCTTAAAACCCTTGGTTTACGCTCTATTGTATATTTGTGTCCTGAACCGTATCCGGAGCATAACATGGAGTTTTTGAAAGCTAATGGAATTCAGTTATTTCAGTTTGGAATCGAAGGAACTAAGGAACCTTTTGTTAATATTCCTGAGGACAGAATTCGTGAAGCGTTAAAAGTTGTTCTTGATGTTAAAAATCAACCCTTGTTGATTCATTGCAAAAGAGGCAAGCACCGAACGGGTTGTCTTGTGGGATGCATGAGAAAAATCCAAAGATGGTGCCTGACGTCTATTTTTGACGAGTACCAAAGATTTGCAGCTGCTAAGGCTAGAATTTCAGATCAGAGGTTTATGGAGGTGTTTGATGCTTCTGGATTCAAAGATATACCACCATGTCCATGTAATTGTTCTAAGAGGTAA 594 39.9 MKFNNNNNQEEHDTCRSIEVVSENCNGEGEEVVYTPPLNFSMVDNGIYRSGFPDTLNFSFLKTLGLRSIVYLCPEPYPEHNMEFLKANGIQLFQFGIEGTKEPFVNIPEDRIREALKVVLDVKNQPLLIHCKRGKHRTGCLVGCMRKIQRWCLTSIFDEYQRFAAAKARISDQRFMEVFDASGFKDIPPCPCNCSKR 197
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01334 197 Gene3D Protein tyrosine phosphatase superfamily 34 183 IPR029021 -
Aann4g01334 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311(InterPro)
Aann4g01334 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 39 190 IPR020422 GO:0006470(InterPro)
Aann4g01334 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 34 179 IPR029021 -
Aann4g01334 197 Pfam Tyrosine phosphatase family 36 185 IPR004861 -
Aann4g01334 197 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791(InterPro)
Aann4g01334 197 PRINTS Plant and fungal dual specificity phosphatase signature 107 121 IPR020428 GO:0016791(InterPro)
Aann4g01334 197 PRINTS Plant and fungal dual specificity phosphatase signature 71 84 IPR020428 GO:0016791(InterPro)
Aann4g01334 197 PRINTS Plant and fungal dual specificity phosphatase signature 34 51 IPR020428 GO:0016791(InterPro)
Aann4g01334 197 FunFam probable tyrosine-protein phosphatase At1g05000 33 183 - -
Aann4g01334 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 20 188 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Aann4g01334 197 CDD PFA-DSP-Siw14 36 180 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01334 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
538 Aann1g03510 Aann4g01334
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:85462547 Aann4g01334 Aann-Chr4:68361387 dispersed
Aann Aann-Chr4:68361387 Aann7g01927 Aann-Chr7:85727713 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g01484 . 75 239 Protein tyrosine phosphatase (PTP) family AT3G44620 73.939 3.39e-88 256.0
Aann1g03510 ACH 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 62.766 1.37e-83 244.0
Aann1g05316 . 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 63.617 0.0 1127.0
Aann1g07232 ACH 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 59.845 9.34e-158 447.0
Aann2g03022 ACH 848 1033 Protein tyrosine phosphatase (PTP) family AT5G58160 49.468 1.72e-46 159.0
Aann2g03025 ACH 803 1282 Protein tyrosine phosphatase (PTP) family AT5G58160 47.438 1.11e-134 433.0
Aann2g03026 ACH 1 447 Protein tyrosine phosphatase (PTP) family AT5G58160 60.134 0.0 587.0
Aann2g03412 . 18 190 Protein tyrosine phosphatase (PTP) family AT3G23610 56.647 6.99e-71 211.0
Aann2g04054 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 55.319 4.08e-101 294.0
Aann2g05635 ACH 460 575 Protein tyrosine phosphatase (PTP) family AT5G01290 57.759 3.21e-32 117.0
Aann3g01107 . 58 611 Protein tyrosine phosphatase (PTP) family AT3G19420 60.963 0.0 713.0
Aann3g01303 . 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 57.035 2.76e-162 460.0
Aann3g03621 ACH 3 784 Protein tyrosine phosphatase (PTP) family AT3G55270 48.043 0.0 705.0
Aann3g04111 . 64 282 Protein tyrosine phosphatase (PTP) family AT3G10940 81.279 4.48e-140 394.0
Aann3g04509 ACH 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 67.857 0.0 666.0
Aann3g04740 ACH 301 378 Protein tyrosine phosphatase (PTP) family AT3G52180 48.101 9.20e-18 74.3
Aann3g04741 . 1 231 Protein tyrosine phosphatase (PTP) family AT3G52180 57.806 7.85e-87 261.0
Aann3g04753 ACH 19 840 Protein tyrosine phosphatase (PTP) family AT3G10550 61.091 0.0 1041.0
Aann3g05416 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 73.308 0.0 805.0
Aann4g01334 ACH 17 207 Protein tyrosine phosphatase (PTP) family AT1G05000 72.775 1.04e-98 283.0
Aann4g01728 . 34 611 Protein tyrosine phosphatase (PTP) family AT3G19420 68.93 0.0 814.0
Aann4g04671 ACH 1 315 Protein tyrosine phosphatase (PTP) family AT2G35680 52.063 1.92e-104 306.0
Aann4g05262 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 62.936 0.0 847.0
Aann5g03570 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 57.644 1.76e-162 485.0
Aann5g04057 . 284 329 Protein tyrosine phosphatase (PTP) family AT3G52180 58.696 3.68e-13 60.5
Aann5g04177 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 32.544 5.95e-20 84.0
Aann5g05498 ACH 361 840 Protein tyrosine phosphatase (PTP) family AT3G10550 61.523 0.0 617.0
Aann5g05499 ACH 19 350 Protein tyrosine phosphatase (PTP) family AT3G10550 67.868 3.24e-162 474.0
Aann6g02198 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 7.03e-07 48.9
Aann6g04248 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.913 4.26e-117 338.0
Aann7g01927 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.295 6.60e-86 252.0
Aann7g02983 ACH 1 392 Protein tyrosine phosphatase (PTP) family AT5G58160 63.706 0.0 568.0
Aann7g03383 ACH 35 207 Protein tyrosine phosphatase (PTP) family AT5G56610 75.723 2.81e-97 283.0
Aann7g03729 . 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 40.625 9.49e-07 48.9
Aann8g01094 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 53.247 0.0 679.0
Aann9g00599 . 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 39.241 7.36e-07 49.7