AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01347 ATGGCAGAAAACCAAGCACCATCAACCGATCACTCCGACCTAATCACATCCTTCACCGAAATCACCTCATCTTCAATCGAGGAAGCCACCTTCTTCCTCGAATCACACAACTTCGATCTCGACTCCGCCGTCTCCACCTTCTTCGAAACCACCACCACCGCCCTACCAACAAACCCTAATTTCGAACAAAACATTGCTAATACTAATACTAATGCTAATGATGATGTGAATTCACCAGCCTCTTCTTCACCTTCTAGGTCTCGATCCGTTTCACCGCCTCCGTCGTTCGAAGCTGGTGGTGGTGGTGGTCGTGGTGGTGTGTATAATTTGAGGTCGAGGAATACGGGTACGGGTACGGGTAAGAAGGAGGCGTCTTCTGGTAGTGGGAGGTCGGGTCGGATAAGGACGTTTGCGGATCTGAATAATAATAAAAACTGTGATGATTGTGATTCAGAGAGTGATGAGGATGGGCCTCAGGAGTATTATGCTGGTGGTCATAAGAGTGGACAGCTTGTCCAAGATCCATCGAAGCACAATGATGTGGAGTCACTGTTTGAACAAGCTAGACGAGCAGGAGCTGAAGACGGAACTCTTGATCAACACCAACCATCCTCAAGCTCCAGAAGCTTTTCTGGAAGAGGAAGATTACTATCTGGAGAGACATTATCAGCTGCCCCCCAGCAACCTGAACCTGAAGCCCACACCATCACTTTCTGGACCAATGGTTTTACTGTAAATGATGGCCCTTTGAGGAGGCTGGACGATCCTCAAAATGCATCTTTCTTGGAGAGCATAAGGAATTCCGAGTGTCCAGAAGAACTTAAGCCTGCTAAAGGAAGAGCTCCTGTTCAAGTTAGTCTTGTGAGGAAGATGGAGGACTACCCTATCAAGAAACAAAGCCAAGCTGCCTTTGCGGGGGTGGGTAGAACCCTAGGCTCCACCACTTCTGCAGATGACACCACTGCTACTATCCCAGCCCCTACAAATGCTGCCCCAACCCCGTTTGTGGGCCTAGTTGTTGATGACACATTACCCTCTACATCTATTCAGCTGAGATTGGGTGATGGGACCCGTATGGTTTCCCGGTTCAATCTCCACCACACTGTAAGCAATATCCGTTCTTTCATTGATGCATCAAGACCAGGTGGGCCCAGGGCTTATCAGCTATTGACTATGGGGTTCCCTCCAAAGCAGCTCAACGATTTGAACCAGACGATTCAAGAGGCTGGGTTAGCCAATTCTGTTGTGATCCAGAAACTCTAA 1263 48.54 MAENQAPSTDHSDLITSFTEITSSSIEEATFFLESHNFDLDSAVSTFFETTTTALPTNPNFEQNIANTNTNANDDVNSPASSSPSRSRSVSPPPSFEAGGGGGRGGVYNLRSRNTGTGTGKKEASSGSGRSGRIRTFADLNNNKNCDDCDSESDEDGPQEYYAGGHKSGQLVQDPSKHNDVESLFEQARRAGAEDGTLDQHQPSSSSRSFSGRGRLLSGETLSAAPQQPEPEAHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRNSECPEELKPAKGRAPVQVSLVRKMEDYPIKKQSQAAFAGVGRTLGSTTSADDTTATIPAPTNAAPTPFVGLVVDDTLPSTSIQLRLGDGTRMVSRFNLHHTVSNIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLNQTIQEAGLANSVVIQKL 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01347 420 ProSiteProfiles UBX domain profile. 342 419 IPR001012 GO:0005515(InterPro)
Aann4g01347 420 MobiDBLite consensus disorder prediction 54 175 - -
Aann4g01347 420 FunFam Plant UBX domain-containing protein 4 296 420 - -
Aann4g01347 420 ProSiteProfiles SEP domain profile. 231 295 IPR012989 -
Aann4g01347 420 Pfam SEP domain 236 309 IPR012989 -
Aann4g01347 420 SMART faf-3 228 321 IPR012989 -
Aann4g01347 420 MobiDBLite consensus disorder prediction 54 92 - -
Aann4g01347 420 CDD UBA-CF106 10 49 IPR039517 -
Aann4g01347 420 MobiDBLite consensus disorder prediction 198 214 - -
Aann4g01347 420 SUPERFAMILY Ubiquitin-like 304 418 IPR029071 -
Aann4g01347 420 SUPERFAMILY UBA-like 9 49 IPR009060 GO:0005515(InterPro)
Aann4g01347 420 Pfam UBA-like domain 13 50 - -
Aann4g01347 420 MobiDBLite consensus disorder prediction 192 214 - -
Aann4g01347 420 Pfam UBX domain 345 419 IPR001012 GO:0005515(InterPro)
Aann4g01347 420 SMART ubx-3 341 420 IPR001012 GO:0005515(InterPro)
Aann4g01347 420 CDD UBX-UBXN2 348 419 - -
Aann4g01347 420 MobiDBLite consensus disorder prediction 110 144 - -
Aann4g01347 420 PANTHER UBX DOMAIN CONTAINING PROTEIN 10 419 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Aann4g01347 420 FunFam Plant UBX domain-containing protein 4 232 293 - -
Aann4g01347 420 Gene3D - 8 50 - -
Aann4g01347 420 Gene3D - 296 420 - -
Aann4g01347 420 Gene3D SEP domain 232 293 IPR036241 -
Aann4g01347 420 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 225 316 IPR036241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01347 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:68663079 Aann6g02625 Aann-Chr6:76288610 wgd