AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01351 ATGATCAAGCAATTTCTTAAAAAGATTCCCAAGAAATCATCCTCAAAATCATCACACCATAATGATGAAATACCCGATTCTAGCTCGAATAAGGCGAATATTTCGAGTGTTAAGTCTAGTGAAGTGGTGCAGATAGTTAATGAAGCTTCTTATGAAGCTTTGCCTAGTTTTCGAGACGTATCAAGTTCCGAAAAGCATAGTTTGTTTATCAAGAAAATGAGTATGTGTTGTGTAGTGTTTGATTTTAACGACCCGTTAAAGAGTTCAAAAGAAAAAGACGTAAAGAAACAAACTTTACTTGAACTAGTTGAATATGTTTCTTCAGTAAGTTCCAAGTTTAATGAGGTTACAATGTTGGAGATAACGAAAATGGTGTCTGCTAATTTGTTTCGGTCATTACCTAACTTAAGTAATGAAAGTAAGCTGCCGGATATATATGATCAAGAAGATGACGAGTTTGTTATGGATCCTTCATGGCCACATCTTCAAGTTGTGTACGAGTTTTTGCTTAGGTTTGTGGCCTCATCAGAGACTGATGCTAAAATTGCGAAAAAGTATATAGATCAGTCTTTCGTGTTAAAGTTGCTTGATCTTTTTGATTCTGAGGATCAAAGGGAAAGGGAGTATTTAAAGACGATTATGCATAGGATTTATGGCAAGTTTATGGTTCATCGGCCGTTTATTAGAAAAGCTATTAATAATATATTTTATCATTTTATTCTTGAGAGTGGTAAGCATAACGGGATAGCGGAAATACTTGAGCTTTTAGGTAGTATAATCAATGGATTTACGATGCCATTGAAGGAAGAACATAAGGTGTTTCTTGTTCGTGTGTTGATTCCGCTTCATAAGCCTAGGTATTTGTCTATGTATCAGCAGCAACTTGTGTATTGTGTCAGTCAGTTTGTTGAAAAAGATTGTAAATTAGCTGATACGGTGATTAGGGGGCTGTTAAAGTATTGGCCTGTGACAAATAGTTCTAAAGAAGTGATGTATCTGAGTGAATTGGAGGAAATTCTTGAAGTTACAAAGGCTGCGGAATTTGAAAAGTGTATGGTTCCTTTGTTTCGTCAGATTGGTCATTGCCTCAATAGTCCACATTTTCAGGTAGCAGAACGTGCATTATTCCTATGGAATAACGAGCATATAAGGAATCTAATAATTAAAAACCGCAAGGTGATTCTGCCCCTCATCTTCTCCCCTTTGGAGAAAAACACAAAAGCTCATTGGAACCAAGCCGTTCAAACCCTAACCGTAAATGTCAGGAAAGTATTCTCAGATTTTGATCAGTCATTATTCCAAGATTGTCTGGTCAGCTATCAAGAACACGAAACCAAGGTAAAGGAAAGCCTTGCAAAGCGACAGATGACTTGGAACCGCCTTGATGCCTTAGCAGCCTCCAAAACCAAGCCTATAGTCATCTCGATGTTTGCCTCACCTGTGACTATGACGACCACCACTGCAGTAAAATGA 1473 37.41 MIKQFLKKIPKKSSSKSSHHNDEIPDSSSNKANISSVKSSEVVQIVNEASYEALPSFRDVSSSEKHSLFIKKMSMCCVVFDFNDPLKSSKEKDVKKQTLLELVEYVSSVSSKFNEVTMLEITKMVSANLFRSLPNLSNESKLPDIYDQEDDEFVMDPSWPHLQVVYEFLLRFVASSETDAKIAKKYIDQSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYHFILESGKHNGIAEILELLGSIINGFTMPLKEEHKVFLVRVLIPLHKPRYLSMYQQQLVYCVSQFVEKDCKLADTVIRGLLKYWPVTNSSKEVMYLSELEEILEVTKAAEFEKCMVPLFRQIGHCLNSPHFQVAERALFLWNNEHIRNLIIKNRKVILPLIFSPLEKNTKAHWNQAVQTLTVNVRKVFSDFDQSLFQDCLVSYQEHETKVKESLAKRQMTWNRLDALAASKTKPIVISMFASPVTMTTTTAVK 490
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01351 490 PIRSF PP2A-B56 3 488 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Aann4g01351 490 SUPERFAMILY ARM repeat 67 446 IPR016024 -
Aann4g01351 490 MobiDBLite consensus disorder prediction 1 35 - -
Aann4g01351 490 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 61 464 - -
Aann4g01351 490 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 8 469 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Aann4g01351 490 Gene3D - 62 463 IPR011989 -
Aann4g01351 490 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 54 465 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01351 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Event-related genes

Select Gene_1 Gene_2 Event_name
532 Aann1g03492 Aann4g01351
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:85302988 Aann4g01351 Aann-Chr4:69122197 dispersed
Aann Aann-Chr3:161978238 Aann4g01351 Aann-Chr4:69122197 dispersed
Aann Aann-Chr4:69122197 Aann5g05453 Aann-Chr5:179951137 dispersed
Aann Aann-Chr4:69122197 Aann3g05475 Aann-Chr3:161967596 transposed