AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01356 ATGGCTACAAGTTCAGAAATTGGGCTTGCAGCAGCTATAAACATCCTCACTGCATTTGCGTTTTTGGTTGCGTTTGCTATACTGCGTATCCAGCCGTTCAATGATAGAGTTTATTTTCCAAAATGGTATTTAAAGGGGTTAAGAAACAACCCACTTCAGTCGGGTGCATTTGTGCAGAAGTTTGTAAACTTGGATTTCAGATCATACTTGAGGTTTCTGAACTGGATGCCGGCTGCTTTGCGTATGCCGGAACCAGAGCTTATTGATCATGCTGGATTGGATTCCGTTGTTTACTTGAGAATTTACTTGACCGGGCTCAAAATTTTTGTTCCGATTGCATGCCTTGCTTTCACGGTCATGGTGCCAGTCAATTGGACTAATCGGACTTTAGAGGAGTCTAAACTAACATTCAGTGACATAGACAAGCTTTCAATATCCAACATTCCCAAAGGTTCAAACAGGTTCTTTACCCATTTAGTCATGGCTTACGCCTTTACGTTTTGGACCTGTTATATTTTAAAAAGAGAGTACGAGATAGTTGCAAAAATGAGGTTGCATTTTATTGCATCAGAACAACGACGGCCTGATCAATTTACTGTGCTAGTGAGAAACGTGCCCCCAGACCCTGATGAGACAGTCAATGAACTTGTGGAGCATTTTTTTCTAGTCAACCATCCGGATCAATATTTATCTCACCAGGTTGTTTATAACGCAAACATACTCTCTAAGTTGGTGAATGAGAAGAAAACAAAGAGGAATTGGCTTGACTATTATCAGCTGAAATATGATAGAAGTAACAAGTCAAAAAGACCATTGATGAAGACTGGTTATCTTGGCCTGTTCGGGAAAAGTGTTGATGCTATTGATTTTTATCAATCTGAGATTGAGAAGCTATTGAAGGAGATATCTAAAGAGAGGGAAAAGATTATAACAAGCTCCAAATATGTTATGCCGGCTGCATTTGTTTCTTTTAAATCAAGATGGGGTGCTGCAGTTTGTGCACAAACTGAACAATCCAGGAACCCAACCGTTTGGCTAACCGAGTGGGCCCCAGAACCCCGTGATGTTTATTGGGATAATCTTGCCATTCCATTTGTTTCACTCACAGTTAGAAGACTTATAATTGCTGTGGCATTTTTCTTCCTTACATTTTTCTTCATGATCCCGATAGCCTTTGTACAGTCACTTGCAAATATTGATGGAATAGTGAAAGCAGCTCCTTTTATGCGAGGCATTATGGAAGTGGAATTTGTCAAGTCTTTCATTCAAGGTGTTATGCCGGGAATTGCTCTGAAGATATTCCTCATCTTTTTACCTTCAATCTTGATGATGATGTCTAAGTTTGAAGGGTTTACCTCTATATCGGCTCTAGAGAGAAGATCTGCATCAAGATATTATATTTTTCAATTTATCAATGTCTTTCTTGGGAGCATAATCACTGGGACTGCATTTCAACAGCTAAATACATTTATCCACCAGCCTGCAAACACTATCCCAGTGACAATTGGTGCATCTATACCGATGAAAGCAACCTTTTTTATAACTTATATCATGGTCGACGGATGGGCTGGAGTTGCTGGGGAGATTCTGAGGTTAAAACCACTAATATTCTATCACCTAAAGAATTTTTTCTTGGTAAAAACCGAAAAAGATAGGGAAGAAGCAATGAACCCTGGAAGTTTATCATTCAACACGGGTGAACCTCAAATCCAGCTTTATTTCTTACTTGGCCTTGTTTATGCTGTTGTCACCCCGATTCTGCTTCCTTTTATAGTCGTATTCTTTGGGCTGGCTTACGTTGTATACCGTCATCAGATTATAAATGTGTATAATCAGCAGTATGAAAGTGCAGGATCTTTCTGGCCAGACGTTCATGGCCGTATTATCACTGCATTGATCGTTTCACAGTTGCTTCTAATGGGTTTGCTTAGCACTAAAGAAGCTGCCCAGTCAACTCCATTGCTTATCGCACTCCCTGTGCTAACCATATGGTTTCATAGATTCTGTAAGGGGCGGTACGAACCAGCTTTTATTAGGTTCCCTTTACAGGAGGCCATGATCAAAGACACACTAGAACGTGCAAGGGAGCCGTGCCTAAACGTGAAAGCCTACTTAGAAAATGCATATGTTCACCCAGTATTTTACAATGAAGACAGATGGGACGGTAGTGATGATGGGATCAGTGATGAGGAGTCGCAGAAAGAACCTCCTCTGGTCGCCACAAAGCGCCCTTCACGAACAAACACACCAGCAAGAAGTCAAAGAAGTGAGTCTACGCGAACCTTGTTGAGTGTCACAGACGAAAGATCTTGCCCGTAA 2319 40.97 MATSSEIGLAAAINILTAFAFLVAFAILRIQPFNDRVYFPKWYLKGLRNNPLQSGAFVQKFVNLDFRSYLRFLNWMPAALRMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFTVMVPVNWTNRTLEESKLTFSDIDKLSISNIPKGSNRFFTHLVMAYAFTFWTCYILKREYEIVAKMRLHFIASEQRRPDQFTVLVRNVPPDPDETVNELVEHFFLVNHPDQYLSHQVVYNANILSKLVNEKKTKRNWLDYYQLKYDRSNKSKRPLMKTGYLGLFGKSVDAIDFYQSEIEKLLKEISKEREKIITSSKYVMPAAFVSFKSRWGAAVCAQTEQSRNPTVWLTEWAPEPRDVYWDNLAIPFVSLTVRRLIIAVAFFFLTFFFMIPIAFVQSLANIDGIVKAAPFMRGIMEVEFVKSFIQGVMPGIALKIFLIFLPSILMMMSKFEGFTSISALERRSASRYYIFQFINVFLGSIITGTAFQQLNTFIHQPANTIPVTIGASIPMKATFFITYIMVDGWAGVAGEILRLKPLIFYHLKNFFLVKTEKDREEAMNPGSLSFNTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGSFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLIALPVLTIWFHRFCKGRYEPAFIRFPLQEAMIKDTLERAREPCLNVKAYLENAYVHPVFYNEDRWDGSDDGISDEESQKEPPLVATKRPSRTNTPARSQRSESTRTLLSVTDERSCP 772
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01356 772 MobiDBLite consensus disorder prediction 742 772 - -
Aann4g01356 772 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
Aann4g01356 772 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
Aann4g01356 772 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 10 727 IPR045122 GO:0005227(PANTHER)|GO:0005227(InterPro)|GO:0005886(PANTHER)
Aann4g01356 772 MobiDBLite consensus disorder prediction 724 772 - -
Aann4g01356 772 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Aann4g01356 772 Coils Coil 288 308 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01356 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:69255286 Aann8g01061 Aann-Chr8:48243930 dispersed
Aann Aann-Chr6:6794058 Aann4g01356 Aann-Chr4:69255286 transposed
Aann Aann-Chr7:121609160 Aann4g01356 Aann-Chr4:69255286 transposed
Aann Aann-Chr8:134061512 Aann4g01356 Aann-Chr4:69255286 transposed
Aann Aann-Chr4:69255286 Aann6g02630 Aann-Chr6:76359319 wgd