AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01379 ATGACGGGAAAGAAGCGATTTGCTTCGAAATCCGTGATATTTTTATTGATATTAATATGCATTGTTGTTATAGTCGGGTTATTATCTCAATTTAAGCTTCAATCATCTTCTACTGAATTTAGTTACTATAATCATCATGACAACTTACTCGAGTATCCCATCAAGGATAATAAGAAGATCGCTTTTTTATTTCTTGTTAGAGATAACCTTCCCCTTGATTTCCTTTGGCATAATTTCTTTAAGAATGCAGATCCTGAGAATTTCACAATCTACATACACTCGAAGCCTGGTATTCTGTTTGACAAGTCAGTTACCAAATCAGCCTTCTTCTACAATCGGCAGCTGAGAAACAGTGTTGAGGTCGGTTGGGGTACACCAACTATGATTGAAGCAGAGAAGCTGTTGTTCAAGGCGGCCCTTGATGATCCACGTAATCAGATATTTGTTCTCCTTTCTGACAGCTGTGTCCCTCTGTATAATTTCAGTTATATATACAAATATCTCATTTCATCTCCACGAAGTTTTGTGGACAGCTTTATAGATGCCACGGATGATCCCAGGGAAAAACGCTATAATCCAGAGATGTCCCCTGACATACCCGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCAGAGGTGGTTGCATATGATCATGATGTTTTCCCAATCTTTGAGAAACACTGTAAGCGGCGACCGCTTCTAGACTTGAGCAAAGGAAATGAGTCTCTTATAGAACAACAGCAACACAATTGCATCCCAGATGAGCATTATGTGCCAACCTTACTCGCAATGCGTGGATATGAAGTTGAATTGGAGCGAAGAACATTAACTTATTCTTTATGGAACCAGTCTGCTGAACCGATGAATACACAAGCCTGGCACCCTGTAACATTTGGTTTTGCAAGTGCCAGCCAAAAGAACATTCAAGATATTAAGGATATTGACCATGTTTATTTTAAGTCTGAAAACCGGACTGAATGGTGTGGTACTAGATCTAGTAGTGGTCCTTGTTATTTATTTGCTAGGAAGTTTTCGCGTGGTGCAGCCATGCGACTTTTGACCAATGGGGTAGTCGGTCCCTATGATCCCAGCACATTGTTCTTAGACCCAACATAG 1137 40.63 MTGKKRFASKSVIFLLILICIVVIVGLLSQFKLQSSSTEFSYYNHHDNLLEYPIKDNKKIAFLFLVRDNLPLDFLWHNFFKNADPENFTIYIHSKPGILFDKSVTKSAFFYNRQLRNSVEVGWGTPTMIEAEKLLFKAALDDPRNQIFVLLSDSCVPLYNFSYIYKYLISSPRSFVDSFIDATDDPREKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDHDVFPIFEKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVPTLLAMRGYEVELERRTLTYSLWNQSAEPMNTQAWHPVTFGFASASQKNIQDIKDIDHVYFKSENRTEWCGTRSSSGPCYLFARKFSRGAAMRLLTNGVVGPYDPSTLFLDPT 378
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01379 378 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 17 360 IPR044174 GO:0016757(InterPro)
Aann4g01379 378 Pfam Core-2-I-Branching enzyme 60 318 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01379 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr3:99595785 Aann4g01379 Aann-Chr4:70668255 dispersed
Aann Aann-Chr4:70668255 Aann4g03966 Aann-Chr4:130008235 dispersed
Aann Aann-Chr4:70668255 Aann6g02633 Aann-Chr6:76389155 wgd