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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01386 ATGATCCTCAATTTTACTGCTTTCATATATTTGAAATCTTGTTGCTTGTTTATCAAAAATCTTATTTCATTTTTATTTTATGTATGTGCAGCTCAAATAACTTCATACTTTTACCCTTATATGACTACCGAGTCAAAAGTTTCGCAGTATGATTACTTGCGACTCTCTGGCTTAGGTGTTATTGGGGCGCTTGTAAAGGAGACAGGTCCAGACACTCCAAATGTTGTTCGTTATCTTTTGCAAGTTGAAACTGTTCCTGTGTGCCTTCGCTGCATGGAAACGGGTGGCGACCTTACAAAATCGGTAGCTGCACTTATACTCGGTAGAATTTTTAGCCAAGAAGAAGGGAAGGCTTATATTGGGTCTTTTGTAGATAGATTTTATGTTGTCACAACGGCTTTGAAGAAAATCGTTGATGAGTTCACTGGAATACCTACACCCTCATTGTTGAAGAATATACTCATTTGCTACCTGCGACTAAGTGAGCTCTCGAGGTTATGCCGATGTTGTGATGCATTGAAGAGATGCTACCCTCTGCAGTTGAGGAATCCTGCGTACCTCAACTACATTTGTGATGGTACCACCAGAGGTTTGGCTGATCAGGTTCTGCAGAATATTAACTCAGGACCTCAAGTTCAATATGTAGGACTGGAAAATGCATTCGCGGGGATGCATATCTAG 681 40.53 MILNFTAFIYLKSCCLFIKNLISFLFYVCAAQITSYFYPYMTTESKVSQYDYLRLSGLGVIGALVKETGPDTPNVVRYLLQVETVPVCLRCMETGGDLTKSVAALILGRIFSQEEGKAYIGSFVDRFYVVTTALKKIVDEFTGIPTPSLLKNILICYLRLSELSRLCRCCDALKRCYPLQLRNPAYLNYICDGTTRGLADQVLQNINSGPQVQYVGLENAFAGMHI 226
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01386 226 PANTHER UNCHARACTERIZED 29 208 IPR007216 GO:0000932(PANTHER)|GO:0006402(InterPro)|GO:0017148(PANTHER)|GO:0030014(InterPro)|GO:0030015(PANTHER)
Aann4g01386 226 Pfam Cell differentiation family, Rcd1-like 29 206 IPR007216 GO:0006402(InterPro)|GO:0030014(InterPro)
Aann4g01386 226 SUPERFAMILY ARM repeat 11 135 IPR016024 -
Aann4g01386 226 Gene3D - 13 209 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01386 K12606 CCR4-NOT transcription complex subunit 9
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:70888535 Aann5g00743 Aann-Chr5:19538145 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aann Rcd1 4.8e-43 CL0020 TR Rcd1-like