AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01394 ATGGGTACTCTATTCAAAGCGAGCTTGTTCTTGTCGTTCCTGTTGTTTCTTCTCGCACCTACTGCTTATTCAGCTGCTAATGGTAAATTGGTTAGAGTTGGACTAAAGAAGAGGAAAATCAACCAATTGAACCAACTTAGTGGACACGCGGGCTCAAAAGAAAGATATGCTGGAAGAAATTCTGGTATCCTTGGTAATATCAGGGACTCAGATAGTGACGCTATAGCTCTAACCAACTACATGGATGCCCAGTATTATGGTGAGATTGGTGTAGGCACTCCACCTCAAAAGTTCACCGTGATTTTTGATACTGGAAGTTCTAATCTTTGGGTGCCTTCAGCAAAATGCTACTTCTCAATGGCTTGCCTATTCCACTCAAAGTATAAGTCTAGCCAATCAAGTACTTATAAGAAAAATGGGAAATCTGCGGCAATTCAGTATGGAACTGGATCGATTTCTGGTTTCTTTAGCCAAGATTCTATCACACTTGGTGATCTTGTTGTTAAAAAGCAGGATTTTATCGAGGCAACCAAAGAGCCTGGAGTAACTTTTTTGGCAGCTAAATTTGACGGTATTCTTGGCCTTGGGTTTCAAGAGATATCTGTTGGGGATGCTGTTCCAGTTTGGTACAAAATGGTGGAACAAGGTCTTGTTCAAGAACCTGTATTTTCATTTTGGCTTAATCGCAATGTTGAAGAGAATGAAGGGGGTGAACTTGTGTTTGGTGGGGTTGATGCTAAGCATTTCAAGGGTGATCACACGTATGTCCCTGTAACTCAAAAAGGCTATTGGCAGTTCGACATGGGTGATGTCCTTATTGGTGATAATACAACTGGATTTTGCTCCGATGGTTGTGCAGCAATTGCTGACTCTGGAACCTCTTTGTTGGCTGGTCCGACGGCTGTTATTACTCAAATCAATCAAGCCATTGGTGCGGAGGGTGTTATGAGCCAACAATGCAAGACATTGGTCGATCATTATGGGAAGACTATTATTGAGAAGCTGTTAACTGAGACACGGCCTGAAAAAGTCTGCTCTCAAATGAATCTATGCACCTTTGATGGATCTCATGATACCGGCATGATCATTGAGAGCGTGGTTGACAAGAACAATGGCAAACCTTCTGGTTTGCGTGATGAGATGTGTCACTATTGTGAGATGGCAGTTGGTTGGATGGAAAACCAGATCAAGAGGAACCAAAGTGAAAAAGATATAATTCACTATGCTGATCAGCTCTGCGAGAAGTTGCCAAGTCCTATGGGAGAATCTGGAGTTGACTGTAACAAACTTTCGTCCATGCCTAATATCGCTTTTACTATTGGTGGTAAAACGTTTGGCCTCTCCCCTCAAGAGTATATCTTGAAAGTTGGTGAGGGAAAAGCAGCACAATGCATCAGTGGATTCACTGCTATGGATGTGGCACCTCCTCGTGGACCTCTCTGGATCCTGGGTGACATTTTCATGGGTAAATACCATACGGTATTCGACTATGGTAACTCACGAGTTGGATTTGCAGAAGCAGCTTAA 1527 42.76 MGTLFKASLFLSFLLFLLAPTAYSAANGKLVRVGLKKRKINQLNQLSGHAGSKERYAGRNSGILGNIRDSDSDAIALTNYMDAQYYGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSMACLFHSKYKSSQSSTYKKNGKSAAIQYGTGSISGFFSQDSITLGDLVVKKQDFIEATKEPGVTFLAAKFDGILGLGFQEISVGDAVPVWYKMVEQGLVQEPVFSFWLNRNVEENEGGELVFGGVDAKHFKGDHTYVPVTQKGYWQFDMGDVLIGDNTTGFCSDGCAAIADSGTSLLAGPTAVITQINQAIGAEGVMSQQCKTLVDHYGKTIIEKLLTETRPEKVCSQMNLCTFDGSHDTGMIIESVVDKNNGKPSGLRDEMCHYCEMAVGWMENQIKRNQSEKDIIHYADQLCEKLPSPMGESGVDCNKLSSMPNIAFTIGGKTFGLSPQEYILKVGEGKAAQCISGFTAMDVAPPRGPLWILGDIFMGKYHTVFDYGNSRVGFAEAA 508
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01394 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
Aann4g01394 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629(InterPro)
Aann4g01394 508 Gene3D - 315 417 - -
Aann4g01394 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Aann4g01394 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Aann4g01394 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Aann4g01394 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Aann4g01394 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
Aann4g01394 508 FunFam Lysosomal aspartic protease 71 313 - -
Aann4g01394 508 CDD phytepsin 75 506 IPR033869 GO:0004190(InterPro)
Aann4g01394 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 13 507 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Aann4g01394 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Aann4g01394 508 SUPERFAMILY Acid proteases 10 507 IPR021109 -
Aann4g01394 508 Pfam Saposin-like type B, region 2 318 351 IPR008138 -
Aann4g01394 508 Gene3D Acid Proteases 31 243 IPR021109 -
Aann4g01394 508 Pfam Eukaryotic aspartyl protease 84 507 IPR033121 -
Aann4g01394 508 Gene3D Acid Proteases 244 508 IPR021109 -
Aann4g01394 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Aann4g01394 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Aann4g01394 508 FunFam Vacuolar aspartic proteinase 400 507 - -
Aann4g01394 508 SUPERFAMILY Saposin 316 417 IPR011001 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01394 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
525 Aann1g03479 Aann4g01394
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:7904662 Aann4g01394 Aann-Chr4:71173796 dispersed
Aann Aann-Chr4:71173796 Aann8g02789 Aann-Chr8:133666235 dispersed
Aann Aann-Chr8:64085265 Aann4g01394 Aann-Chr4:71173796 transposed
Aann Aann-Chr1:85131196 Aann4g01394 Aann-Chr4:71173796 wgd