AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01402 ATGAAGCAATGGAGCATAAAGGCTACATTGTTAATGTTACTAGCAATGTTGTATACTATAAATGGTGAAGACCCTTATAGGTTTTTTGATTGGAATGTTACTTATGGTGATATTTACCCTCTTGGAGTTAAGCAACAGGGGATATTGATTAATGGGCAGTTTCCTGGGCCACAAATCGACTCGGTTACTAATGATAATGTGATTGTTAGTATTTACAACAACTTGGATGAACCATTCCTTATTACATGGAATGGGATACAACAAAGGAGAAATTCATGGCAAGATGGAGTTTACGGCACGAATTGCCCAATCCCACCTGGCCAAAACTTTACATACATTCTTCAAGTCAAGGATCAAATTGGTAGTTTCTTCTACTTTCCGTCACTTGGGATGCACCGGGCTGCTGGAGGTTTTGGTGGCATTACAATCTCCAGCCGCCCAAGGATCCCTGTCCCATTCCCTCCACCCGCGGGAGATTTCACTATTCTCGCGGGTGATTGGTTTAAGCAAAACCACACTGATTTGAAAGCAATATTAGATGGAGGGCATGATCTTCCATTCCCTGATGGTCTCCTTATTAATGGCCGTGGATCTAATGGATTCACATTCAACGTTGATCAAGGGAAAACTTATAGGCTGAGGATATCGAACGTGGGACTTACTACATCAATCAACTTCAGGATCCAGGGCCATAAGATGTTGCTAGTAGAGACTGAAGGAACTCATACTCTTCAAAACACATACTCTTCTCTCGATATTCATTTGGGCCAATCATACTCGGTTTTGATCACTGCTGATCAACCACCGGCAAATTACTACATGGTTGTCTCAACTAGATTCACCTCTCAAGTCCTTTCCGCTACCTCCATTCTTCGTTACAGCAATTCCGGGGGATCTTTCCCAGCTCCTCCACCTGGTGGCCCCACCATTCAAATTGATTGGTCTTTGAATCAAGCCCGGTCTATTAGGCAAAACTTGACAGCAAGTGGACCAAGGCCAAACCCCCAAGGCTCATACCATTACGGTATGGTTAACTTCACTCGAACCATAAGGCTCGCGAACTCTGCTCCTATTATAAATGGCAAGCAGAGATACGCTGTCAACAGTGTGTCGTTTATACCAGCAGACACACCGCTAAAGATTGCCGATTATTTCAAGATCTCGGGTGTGTTTTCCCTTGGAACCATTTCCGACAGTCCCAATGGTGGTGGTGGTTACCTTCAAACTTCCGTTATGGCTGCTGATTTCCGAGCGTTTGCTGAAATTGTTTTTGAGAATTCAGAAGATACCGTGCAATCTTGGCACATTGATGGACACTTTTTCTTTGTCGTCGGGATGGATGGAGGGCCGTGGTCTGAAGCTAGCAGAACAAGCTACAATTTAAGAGACGGGATATCCCGCTCTACAGTTCAAGTATACCCAAGATCATGGACAGCATTGTATGTACCACTAGACAATGTTGGTATGTGGAACATAAGATCTCAGAATTGGGCTAGACAATACTTAGGTCAACAATTTTATCTTCGAGTTTATTCACCGGTAAATTCATGGAGAGACGAGTACCCGATCCCAAAGAATGCCATTACTTGCGGCCGAGCAAGTGGTCGCAAGACACGTCCTTTGTAA 1626 43.97 MKQWSIKATLLMLLAMLYTINGEDPYRFFDWNVTYGDIYPLGVKQQGILINGQFPGPQIDSVTNDNVIVSIYNNLDEPFLITWNGIQQRRNSWQDGVYGTNCPIPPGQNFTYILQVKDQIGSFFYFPSLGMHRAAGGFGGITISSRPRIPVPFPPPAGDFTILAGDWFKQNHTDLKAILDGGHDLPFPDGLLINGRGSNGFTFNVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVETEGTHTLQNTYSSLDIHLGQSYSVLITADQPPANYYMVVSTRFTSQVLSATSILRYSNSGGSFPAPPPGGPTIQIDWSLNQARSIRQNLTASGPRPNPQGSYHYGMVNFTRTIRLANSAPIINGKQRYAVNSVSFIPADTPLKIADYFKISGVFSLGTISDSPNGGGGYLQTSVMAADFRAFAEIVFENSEDTVQSWHIDGHFFFVVGMDGGPWSEASRTSYNLRDGISRSTVQVYPRSWTALYVPLDNVGMWNIRSQNWARQYLGQQFYLRVYSPVNSWRDEYPIPKNAITCGRASGRKTRPL 541
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01402 541 CDD CuRO-1-AAO-like-1 28 143 IPR034273 GO:0005507(InterPro)
Aann4g01402 541 SUPERFAMILY Cupredoxins 19 173 IPR008972 -
Aann4g01402 541 Pfam Multicopper oxidase 376 513 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
Aann4g01402 541 FunFam Monocopper oxidase-like protein 343 540 - -
Aann4g01402 541 Pfam Multicopper oxidase 159 296 IPR001117 -
Aann4g01402 541 SUPERFAMILY Cupredoxins 153 333 IPR008972 -
Aann4g01402 541 SUPERFAMILY Cupredoxins 343 532 IPR008972 -
Aann4g01402 541 Gene3D - 158 332 IPR008972 -
Aann4g01402 541 Gene3D - 342 538 IPR008972 -
Aann4g01402 541 Gene3D - 26 147 IPR008972 -
Aann4g01402 541 PANTHER MULTI-COPPER OXIDASE 27 507 IPR045087 GO:0016491(PANTHER)
Aann4g01402 541 Pfam Multicopper oxidase 32 146 IPR011707 GO:0005507(InterPro)
Aann4g01402 541 FunFam Monocopper oxidase-like protein 157 331 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01402 K19791 iron transport multicopper oxidase
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Event-related genes

Select Gene_1 Gene_2 Event_name
522 Aann1g03472 Aann4g01402
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:71255420 Aann7g00436 Aann-Chr7:33351847 dispersed
Aann Aann-Chr2:80573651 Aann4g01402 Aann-Chr4:71255420 transposed
Aann Aann-Chr3:127367826 Aann4g01402 Aann-Chr4:71255420 transposed
Aann Aann-Chr5:196414356 Aann4g01402 Aann-Chr4:71255420 transposed
Aann Aann-Chr7:95478906 Aann4g01402 Aann-Chr4:71255420 transposed
Aann Aann-Chr1:85034354 Aann4g01402 Aann-Chr4:71255420 wgd
Aann Aann-Chr4:71255420 Aann6g02655 Aann-Chr6:76592672 wgd