AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01410 ATGGAGCTGAAAGATAAGATTAAGATACTAGTTACAGTGTCCTGTGTTACTGTACTTGCAACAGTGATTAAAATCTTATTAGATAAAAGAGATCGAAGGCTAAAAGAGTCGTGTTATTTGAAAACAGAGGAGAAATGTCAGCATAAGTTTAAACGTGTCTTGGCTAATAATTCTTACGCGCCTTTTAAGCATTTCAAGGTTCATGACAATTCAACGGATTTGCATCCGTATGAATCGGAGATCAAGGCTCTGTTGGAGAAACCGCAGCTAGATATTGAATTTTCTAATGGTAAGATGGGTGACATGAAGGATGCATATGTTTGGGTTGACGATGAAGTAAAGTTGAAACAGCTTGTTGAGGTATTGAGTAAAGAAAGAGTGTTTGCTGTGGATACTGAACAACATAGTTTACGTTCATTCTTAGGGTTTACAGCTCTTATTCAGATTTCTACAAGAGATGAAGATTATTTGGTGGACACCATCGCTCTTCATGATGTTATGGGAATCCTCAGCCCCGTATTTGCCAATCCCAATATATGCAAGGTGTTTCATGGTGCTGATAACGATGTAATATGGCTACAAAGGGATTTTCATATCTATGTTGTAAACTTATTTGACACTGCCAAGGCATGTGACGTGTTATCAAAACCACAGAGATCATTAGCATACTTACTTGAAACATATTGTGGTGTCATCACTAACAAGTTTTACCAGCGTGAAGATTGGCGACAACGTCCACTGCCAGAAGATATGCTTGAATATGCTCGGATGGATGCGCACTATTTGCTGTATATTGCAGATTGTCTTGTTGCTGAGCTCAAACTCCAGAAAAATGAAAATCCAGCCAGTCTCGATGACAACAAATTCGATTTTGTTTACGAGGCCAGCCGGCGTTCCAATGCTGTGTGTCTGCAACTATTCACTAAAGAACTAGAAGCTTCCCCGGGGCAGTCTGCTGCTTCTTCAATTATTTCCAGGCACTTGAATGATCCTGGAAGCTCTACAAACAACAGTCAGTTTCAGGGTATCGTCAGACGCCTATGCTGTTGGAGGGATTTCATGGCCCGCATGCATGATGAGAGCCTTAAATACGTACTATCGGATAATGCTATTGTCGCGCTTGCCGAAAAAGTACCAGTAACCGAAACAGATATTTCGACTACAATATCACAAGCTGATACACATCTTGACTTTCTCAATTCAAATTCTACCACTCGTTCTCCATCGTCCGTAGTTTTAAGTCATTTGGTTGATTTCCGTTTTCTTCTTCAAGGTGAATTACAGAATCCTGATGAAATACTACAAATCTATATAAAGAAGCATCTTGGGCCAAATGGTTCTTGTCCTTTATCTCTTTACAACTACGGCCTACTGTCGAAAAGCAATATTAAAGTGCCAAAGATATTAGTTTCAAAAGAAAATGGATATAAATTTTCAAAACAGGTTGCTAGGAAGGCTTCTCGACAGCTTTTTGTTCAGAAGTTTTCCTGTAAATCGCCAGTTTATCACAATTGCAGGATATATGCTAATGATGGACGATTGTTATGTTACTGTGATCGAAGGAAGCTAGAATGGTATTTGAAGAGAGATCTGGCAAAAATTGTTGATGAAGATCCACCAGCCATAATGCTTCTCTTTGAACCTAAAGGCCGGCCAGAAGATGAAGGAAATGATTTCTATATACAGAGCAAGAAAAATATATGTGTAGGCTGTGGTGAAGGAAACCACTACTTACGCTACCGTATCATCCCATCATGCTATAGAATACACTTCCCTGAACATCTAAAAAGCCACCGCTCTCACGATATTGTTCTAGTTTGTGTCGATTGTCATGAAAAAGCACACTCTTTTGCTGAAAAGTATAAGAAGAAAGTCGCTTCGGACTATGGGATACCGTTATTTGTACACAAAGTGGTTAATTCTAGTGAGGGAGATGGTGTTTCTGGAGGTTCTACGTCTGTCATGAAACTTGGTGATGGGGGTGTGTCTCCTTTAGAGTTGCGTACGGCTGCAATGGCTCTATTGAGGCATGGTCCAAGAATGCCGCCTCAACGCCGTGAGGAATTGACACAGATTGTCAGGAAGTATTATGGAGGACGAGAGATATCGGATGAAGACTTGGAAAATGCTTTCTATGTTGGAATGAGTCCTCACGAGAAAAGACGAATGCAGAAAAAGAGAGGCTCGTTTCTTAATAGTTCCTCAAAAAACATCGTCTCAGATACGGCGCTAAATAGTGATATAGAAGATGGTGCAGACACGTCTAAAAATGAAATTAATGAGCCTGAAAATGGTTCTATCTTGGATTCAGATATCAATTCTGAACCTATAGATGCATCTGCTAAACAAAATGGATCTACAAACGTAAGTTCTGATGGTGGAGTAATTGCTACATGCGGTTCAAAATTATCGTTATTAGGGCATGGACCACATGGGAAGCAAGTTGTTGATTATCTGCTGAAGGAACATGGGGAAGATGGGATTCGTGAATTTTGTCAAAGATGGAGACAAGTGTTTGTTGAAGCTATCAATCCTCGGTTTTTACCAGCTGGTTGGGATGTGACACATAGTGGTAGAAGAGAGTTCGGGGACTTCAGCGTATACAATCCTGCAAATAAGGGACCTCCTTCTGCTGCTAAGGATCTGGCCCGTGTAGAAGAAACGGATGTTGTAAGTTAG 2679 40.35 MELKDKIKILVTVSCVTVLATVIKILLDKRDRRLKESCYLKTEEKCQHKFKRVLANNSYAPFKHFKVHDNSTDLHPYESEIKALLEKPQLDIEFSNGKMGDMKDAYVWVDDEVKLKQLVEVLSKERVFAVDTEQHSLRSFLGFTALIQISTRDEDYLVDTIALHDVMGILSPVFANPNICKVFHGADNDVIWLQRDFHIYVVNLFDTAKACDVLSKPQRSLAYLLETYCGVITNKFYQREDWRQRPLPEDMLEYARMDAHYLLYIADCLVAELKLQKNENPASLDDNKFDFVYEASRRSNAVCLQLFTKELEASPGQSAASSIISRHLNDPGSSTNNSQFQGIVRRLCCWRDFMARMHDESLKYVLSDNAIVALAEKVPVTETDISTTISQADTHLDFLNSNSTTRSPSSVVLSHLVDFRFLLQGELQNPDEILQIYIKKHLGPNGSCPLSLYNYGLLSKSNIKVPKILVSKENGYKFSKQVARKASRQLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLKRDLAKIVDEDPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSFAEKYKKKVASDYGIPLFVHKVVNSSEGDGVSGGSTSVMKLGDGGVSPLELRTAAMALLRHGPRMPPQRREELTQIVRKYYGGREISDEDLENAFYVGMSPHEKRRMQKKRGSFLNSSSKNIVSDTALNSDIEDGADTSKNEINEPENGSILDSDINSEPIDASAKQNGSTNVSSDGGVIATCGSKLSLLGHGPHGKQVVDYLLKEHGEDGIREFCQRWRQVFVEAINPRFLPAGWDVTHSGRREFGDFSVYNPANKGPPSAAKDLARVEETDVVS 892
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01410 892 CDD Rrp6p-like-exo 102 297 IPR049559 -
Aann4g01410 892 ProSiteProfiles HRDC domain profile. 337 426 IPR002121 GO:0003676(InterPro)
Aann4g01410 892 PANTHER POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED 35 872 IPR045092 GO:0000175(PANTHER)|GO:0000175(InterPro)|GO:0000176(PANTHER)|GO:0000467(PANTHER)|GO:0000467(InterPro)|GO:0003727(PANTHER)|GO:0005730(PANTHER)|GO:0071035(PANTHER)|GO:0071036(PANTHER)|GO:0071037(PANTHER)|GO:0071038(PANTHER)|GO:0071039(PANTHER)|GO:0071040(PANTHER)|GO:0071044(PANTHER)|GO:0071051(PANTHER)
Aann4g01410 892 Gene3D HRDC domain 331 432 IPR044876 -
Aann4g01410 892 SMART 35exoneu6 106 274 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Aann4g01410 892 MobiDBLite consensus disorder prediction 758 791 - -
Aann4g01410 892 SUPERFAMILY HRDC-like 335 390 IPR010997 GO:0000166(InterPro)|GO:0044237(InterPro)
Aann4g01410 892 SUPERFAMILY Ribonuclease H-like 47 277 IPR012337 -
Aann4g01410 892 Gene3D - 26 313 IPR036397 GO:0003676(InterPro)
Aann4g01410 892 Pfam HRDC domain 342 386 IPR002121 GO:0003676(InterPro)
Aann4g01410 892 MobiDBLite consensus disorder prediction 741 791 - -
Aann4g01410 892 Pfam 3'-5' exonuclease 106 273 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Aann4g01410 892 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 44 313 - -
Aann4g01410 892 MobiDBLite consensus disorder prediction 873 892 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01410 K12951 cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr3:152778417 Aann4g01410 Aann-Chr4:71463395 dispersed
Aann Aann-Chr3:152790294 Aann4g01410 Aann-Chr4:71463395 dispersed
Aann Aann-Chr4:71463395 Aann6g01558 Aann-Chr6:62007553 dispersed
Aann Aann-Chr4:71463395 Aann3g05877 Aann-Chr3:170816312 transposed