Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aann4g01410 | ATGGAGCTGAAAGATAAGATTAAGATACTAGTTACAGTGTCCTGTGTTACTGTACTTGCAACAGTGATTAAAATCTTATTAGATAAAAGAGATCGAAGGCTAAAAGAGTCGTGTTATTTGAAAACAGAGGAGAAATGTCAGCATAAGTTTAAACGTGTCTTGGCTAATAATTCTTACGCGCCTTTTAAGCATTTCAAGGTTCATGACAATTCAACGGATTTGCATCCGTATGAATCGGAGATCAAGGCTCTGTTGGAGAAACCGCAGCTAGATATTGAATTTTCTAATGGTAAGATGGGTGACATGAAGGATGCATATGTTTGGGTTGACGATGAAGTAAAGTTGAAACAGCTTGTTGAGGTATTGAGTAAAGAAAGAGTGTTTGCTGTGGATACTGAACAACATAGTTTACGTTCATTCTTAGGGTTTACAGCTCTTATTCAGATTTCTACAAGAGATGAAGATTATTTGGTGGACACCATCGCTCTTCATGATGTTATGGGAATCCTCAGCCCCGTATTTGCCAATCCCAATATATGCAAGGTGTTTCATGGTGCTGATAACGATGTAATATGGCTACAAAGGGATTTTCATATCTATGTTGTAAACTTATTTGACACTGCCAAGGCATGTGACGTGTTATCAAAACCACAGAGATCATTAGCATACTTACTTGAAACATATTGTGGTGTCATCACTAACAAGTTTTACCAGCGTGAAGATTGGCGACAACGTCCACTGCCAGAAGATATGCTTGAATATGCTCGGATGGATGCGCACTATTTGCTGTATATTGCAGATTGTCTTGTTGCTGAGCTCAAACTCCAGAAAAATGAAAATCCAGCCAGTCTCGATGACAACAAATTCGATTTTGTTTACGAGGCCAGCCGGCGTTCCAATGCTGTGTGTCTGCAACTATTCACTAAAGAACTAGAAGCTTCCCCGGGGCAGTCTGCTGCTTCTTCAATTATTTCCAGGCACTTGAATGATCCTGGAAGCTCTACAAACAACAGTCAGTTTCAGGGTATCGTCAGACGCCTATGCTGTTGGAGGGATTTCATGGCCCGCATGCATGATGAGAGCCTTAAATACGTACTATCGGATAATGCTATTGTCGCGCTTGCCGAAAAAGTACCAGTAACCGAAACAGATATTTCGACTACAATATCACAAGCTGATACACATCTTGACTTTCTCAATTCAAATTCTACCACTCGTTCTCCATCGTCCGTAGTTTTAAGTCATTTGGTTGATTTCCGTTTTCTTCTTCAAGGTGAATTACAGAATCCTGATGAAATACTACAAATCTATATAAAGAAGCATCTTGGGCCAAATGGTTCTTGTCCTTTATCTCTTTACAACTACGGCCTACTGTCGAAAAGCAATATTAAAGTGCCAAAGATATTAGTTTCAAAAGAAAATGGATATAAATTTTCAAAACAGGTTGCTAGGAAGGCTTCTCGACAGCTTTTTGTTCAGAAGTTTTCCTGTAAATCGCCAGTTTATCACAATTGCAGGATATATGCTAATGATGGACGATTGTTATGTTACTGTGATCGAAGGAAGCTAGAATGGTATTTGAAGAGAGATCTGGCAAAAATTGTTGATGAAGATCCACCAGCCATAATGCTTCTCTTTGAACCTAAAGGCCGGCCAGAAGATGAAGGAAATGATTTCTATATACAGAGCAAGAAAAATATATGTGTAGGCTGTGGTGAAGGAAACCACTACTTACGCTACCGTATCATCCCATCATGCTATAGAATACACTTCCCTGAACATCTAAAAAGCCACCGCTCTCACGATATTGTTCTAGTTTGTGTCGATTGTCATGAAAAAGCACACTCTTTTGCTGAAAAGTATAAGAAGAAAGTCGCTTCGGACTATGGGATACCGTTATTTGTACACAAAGTGGTTAATTCTAGTGAGGGAGATGGTGTTTCTGGAGGTTCTACGTCTGTCATGAAACTTGGTGATGGGGGTGTGTCTCCTTTAGAGTTGCGTACGGCTGCAATGGCTCTATTGAGGCATGGTCCAAGAATGCCGCCTCAACGCCGTGAGGAATTGACACAGATTGTCAGGAAGTATTATGGAGGACGAGAGATATCGGATGAAGACTTGGAAAATGCTTTCTATGTTGGAATGAGTCCTCACGAGAAAAGACGAATGCAGAAAAAGAGAGGCTCGTTTCTTAATAGTTCCTCAAAAAACATCGTCTCAGATACGGCGCTAAATAGTGATATAGAAGATGGTGCAGACACGTCTAAAAATGAAATTAATGAGCCTGAAAATGGTTCTATCTTGGATTCAGATATCAATTCTGAACCTATAGATGCATCTGCTAAACAAAATGGATCTACAAACGTAAGTTCTGATGGTGGAGTAATTGCTACATGCGGTTCAAAATTATCGTTATTAGGGCATGGACCACATGGGAAGCAAGTTGTTGATTATCTGCTGAAGGAACATGGGGAAGATGGGATTCGTGAATTTTGTCAAAGATGGAGACAAGTGTTTGTTGAAGCTATCAATCCTCGGTTTTTACCAGCTGGTTGGGATGTGACACATAGTGGTAGAAGAGAGTTCGGGGACTTCAGCGTATACAATCCTGCAAATAAGGGACCTCCTTCTGCTGCTAAGGATCTGGCCCGTGTAGAAGAAACGGATGTTGTAAGTTAG | 2679 | 40.35 | MELKDKIKILVTVSCVTVLATVIKILLDKRDRRLKESCYLKTEEKCQHKFKRVLANNSYAPFKHFKVHDNSTDLHPYESEIKALLEKPQLDIEFSNGKMGDMKDAYVWVDDEVKLKQLVEVLSKERVFAVDTEQHSLRSFLGFTALIQISTRDEDYLVDTIALHDVMGILSPVFANPNICKVFHGADNDVIWLQRDFHIYVVNLFDTAKACDVLSKPQRSLAYLLETYCGVITNKFYQREDWRQRPLPEDMLEYARMDAHYLLYIADCLVAELKLQKNENPASLDDNKFDFVYEASRRSNAVCLQLFTKELEASPGQSAASSIISRHLNDPGSSTNNSQFQGIVRRLCCWRDFMARMHDESLKYVLSDNAIVALAEKVPVTETDISTTISQADTHLDFLNSNSTTRSPSSVVLSHLVDFRFLLQGELQNPDEILQIYIKKHLGPNGSCPLSLYNYGLLSKSNIKVPKILVSKENGYKFSKQVARKASRQLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLKRDLAKIVDEDPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSFAEKYKKKVASDYGIPLFVHKVVNSSEGDGVSGGSTSVMKLGDGGVSPLELRTAAMALLRHGPRMPPQRREELTQIVRKYYGGREISDEDLENAFYVGMSPHEKRRMQKKRGSFLNSSSKNIVSDTALNSDIEDGADTSKNEINEPENGSILDSDINSEPIDASAKQNGSTNVSSDGGVIATCGSKLSLLGHGPHGKQVVDYLLKEHGEDGIREFCQRWRQVFVEAINPRFLPAGWDVTHSGRREFGDFSVYNPANKGPPSAAKDLARVEETDVVS | 892 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aann4g01410 | 892 | CDD | Rrp6p-like-exo | 102 | 297 | IPR049559 | - | |
| Aann4g01410 | 892 | ProSiteProfiles | HRDC domain profile. | 337 | 426 | IPR002121 | GO:0003676(InterPro) | |
| Aann4g01410 | 892 | PANTHER | POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED | 35 | 872 | IPR045092 | GO:0000175(PANTHER)|GO:0000175(InterPro)|GO:0000176(PANTHER)|GO:0000467(PANTHER)|GO:0000467(InterPro)|GO:0003727(PANTHER)|GO:0005730(PANTHER)|GO:0071035(PANTHER)|GO:0071036(PANTHER)|GO:0071037(PANTHER)|GO:0071038(PANTHER)|GO:0071039(PANTHER)|GO:0071040(PANTHER)|GO:0071044(PANTHER)|GO:0071051(PANTHER) | |
| Aann4g01410 | 892 | Gene3D | HRDC domain | 331 | 432 | IPR044876 | - | |
| Aann4g01410 | 892 | SMART | 35exoneu6 | 106 | 274 | IPR002562 | GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro) | |
| Aann4g01410 | 892 | MobiDBLite | consensus disorder prediction | 758 | 791 | - | - | |
| Aann4g01410 | 892 | SUPERFAMILY | HRDC-like | 335 | 390 | IPR010997 | GO:0000166(InterPro)|GO:0044237(InterPro) | |
| Aann4g01410 | 892 | SUPERFAMILY | Ribonuclease H-like | 47 | 277 | IPR012337 | - | |
| Aann4g01410 | 892 | Gene3D | - | 26 | 313 | IPR036397 | GO:0003676(InterPro) | |
| Aann4g01410 | 892 | Pfam | HRDC domain | 342 | 386 | IPR002121 | GO:0003676(InterPro) | |
| Aann4g01410 | 892 | MobiDBLite | consensus disorder prediction | 741 | 791 | - | - | |
| Aann4g01410 | 892 | Pfam | 3'-5' exonuclease | 106 | 273 | IPR002562 | GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro) | |
| Aann4g01410 | 892 | FunFam | Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain | 44 | 313 | - | - | |
| Aann4g01410 | 892 | MobiDBLite | consensus disorder prediction | 873 | 892 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aann4g01410 | K12951 | cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Aann | Aann-Chr3:152778417 | Aann4g01410 | Aann-Chr4:71463395 | dispersed | |
| Aann | Aann-Chr3:152790294 | Aann4g01410 | Aann-Chr4:71463395 | dispersed | |
| Aann | Aann-Chr4:71463395 | Aann6g01558 | Aann-Chr6:62007553 | dispersed | |
| Aann | Aann-Chr4:71463395 | Aann3g05877 | Aann-Chr3:170816312 | transposed |