AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01426 ATGAATCAAGTTAGCAGAAAAATGTGGGGTTTGAGCCTTAAGAAAACAATTATATGGCGTGTAGCTTTTCTACGAAGATGTGCGCGATCTTTTTGGCGCCAAATTTTAGCTTGTTGGATTGGGAAGTCTATTAGGTATAGGCAATTGTTAAAGTCCGGTTCGGGGTCTTTGATCCCGTCAACCTCTAGTCGTCGTTGTCCTAGTGCTAGGACAACGACGACTGTTGGTATGGAAACTCTAAGTCAGGAGTTTCCATCAAGGGAAATGACAGATAATAGCGGGGAAATAACTTCATTATGTGGAGGAGAGGAACATGATCATGGTAATGATTTGGTGGCTTTGAAGATTTGTTTGTTGGGAGATCATCATATTGGCAAAACAAGTTTCTTGGCAAAGTACATTGGGAAAGAGAAGAATCAAGAAGAATTAGAAGCTAAAAGAATAAACTCTATGGACAAAACATTGTGCATTAAAGGAGCCAGGATTTCATACAGCATATGGGAAGTTGGTGGTGATGCATTTTATCCAGATGGTGATCCAAGTACTTCGATTCCTACAGCTTGTAAAGACTCGGTTGCTATGCTATTCATGTTTGATCTAACAAGTCGCCGTACGCTTAATAGTGTTATCAATTGGCATCAACAAGCTAGGAATTATAATCAGACGGCGATTCCTGTGATGGTGGGTAGCAAGTTTGATGAATTTGTCCAACTTCCATTAGATTTACAATGGACGATTGCAAACGAGGCAAGAGCCTATGCGAAGGCCATAAACGCGACCTTGTTCTTCTCAAGTGCATCCTACAACATAAATGTAAATAAGATCTTCAAGTTTGTAACTGCAAAGCTTTTTGACTTGCCATGGACTTTGGAGCGCAATCTTAATATTGGCGAGCCTATTATTGACTTTTAG 912 40.13 MNQVSRKMWGLSLKKTIIWRVAFLRRCARSFWRQILACWIGKSIRYRQLLKSGSGSLIPSTSSRRCPSARTTTTVGMETLSQEFPSREMTDNSGEITSLCGGEEHDHGNDLVALKICLLGDHHIGKTSFLAKYIGKEKNQEELEAKRINSMDKTLCIKGARISYSIWEVGGDAFYPDGDPSTSIPTACKDSVAMLFMFDLTSRRTLNSVINWHQQARNYNQTAIPVMVGSKFDEFVQLPLDLQWTIANEARAYAKAINATLFFSSASYNINVNKIFKFVTAKLFDLPWTLERNLNIGEPIIDF 303
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01426 303 ProSiteProfiles small GTPase Rab1 family profile. 104 303 - -
Aann4g01426 303 PANTHER - 112 302 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Aann4g01426 303 Gene3D - 103 292 IPR027417 -
Aann4g01426 303 PRINTS Transforming protein P21 ras signature 155 177 - -
Aann4g01426 303 PRINTS Transforming protein P21 ras signature 221 234 - -
Aann4g01426 303 PRINTS Transforming protein P21 ras signature 114 135 - -
Aann4g01426 303 PRINTS Transforming protein P21 ras signature 261 283 - -
Aann4g01426 303 Pfam Ras family 115 282 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Aann4g01426 303 SMART rab-sub-5 114 286 - -
Aann4g01426 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 297 IPR027417 -
Aann4g01426 303 FunFam Septum-promoting GTP-binding protein 1 104 293 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01426 K07976 Rab family, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
519 Aann1g03432 Aann4g01426
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr1:84715341 Aann4g01426 Aann-Chr4:71682219 dispersed
Aann Aann-Chr4:71682219 Aann3g03269 Aann-Chr3:133639937 dispersed