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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01441 ATGCAGCTGAATGCAGATAAAAGCCCATTTCAGCGAACGTATGCTGGTCAGATTAAAAGATGCGGAGAAATGGCAAGGAAGTTGCGTTACTTCAAAGATCAAATGTCGAAGGCGGGCTTAACACCCGCGACAATAACTGACGCACAAACTGATACTAATCTGGATGATCTAGAGGTGAAACTTGAAGATCTTGAAGCTGAGCTAATTGAAATAAATGCAAATAGTGAGAAACTGCAGCGTGGTTATAATGAGCTTGTAGAATATAAGCTTGTCTTACAGAAGGCTGGAGAGTTTTTCAGAGCGGCACACAGCAGTGCTATAGCTCAGCAGAGAGAAAGTGATTCGGCTCCTGAAGAATCTTTGGAGACTCCTCTTCTGACGGATCAAGATCCAAAAACTGACCAAGGCAAGCAAGTTAAGTTGGGGTTTCTAGCTGGTCTTGTGCCAAAGGCAAAAGCTATAGCTTTTGAAAGAATTTTATTTCGTGCTACAAGGGGTAATGTCTTTTTGAGGCAAGCGCCTGTTGATGAAGCTGTTATTGATCCTAGCTCAGGAGAGAAGGTTGAGAAGAATGTATTTCTGGTTTTCTTTTCTGGAGAAAGAGCAAAAAGCAAAGTTCTCAAAATATGTGAAGCTTTCGGGGCAAATCGTTACCCTTTTGCAGATGATCTTAGCAAACAAGAAGAAACAATAACCGAGGTATCTGGAAGGACATCTGAGCTAAAGACAACAATAGATGCTGGTCTTCTGCACCGCGGAAATCTGTTGCAAATAATAGGAGAAAAATATGATCGGTGGAACCTTTTGGTTCGTAAAGAGAAGTCTATTTATCACACACTGAATATGCTCAGCATCGACGTGACAAAGAAGTGTCTTGTGGCTGAAGGGTGGAGTCCCATATATGCGACAGAACAGATTCAAGATGCACTGGAGCGGGCAACAACAGACTCAAACTCACAAGTTGGTGCTATATTCCAGGTTTTGACCACAAAAGAGTTGCCTCCAACGTTTTTCCGGACAAACAAGTTTACTGATTGCTTTCAAACAATCGTTGATGCGTATGGGGTTGCCAAGTACCAAGAAGCAAATCCTGGAGTATATACGATCGTCACATTTCCATTTCTATTTGCTGTAATGTTTGGTGATTGGGGCCATGGTATATGCATCCTGCTGGCAACTTTATTTTTGATATCCAGGGAGAAGAAATATGCCAATCAGGTACCTTGCACTTGGTCCTCTGACCTAATCTTGTAA 1254 42.11 MQLNADKSPFQRTYAGQIKRCGEMARKLRYFKDQMSKAGLTPATITDAQTDTNLDDLEVKLEDLEAELIEINANSEKLQRGYNELVEYKLVLQKAGEFFRAAHSSAIAQQRESDSAPEESLETPLLTDQDPKTDQGKQVKLGFLAGLVPKAKAIAFERILFRATRGNVFLRQAPVDEAVIDPSSGEKVEKNVFLVFFSGERAKSKVLKICEAFGANRYPFADDLSKQEETITEVSGRTSELKTTIDAGLLHRGNLLQIIGEKYDRWNLLVRKEKSIYHTLNMLSIDVTKKCLVAEGWSPIYATEQIQDALERATTDSNSQVGAIFQVLTTKELPPTFFRTNKFTDCFQTIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICILLATLFLISREKKYANQVPCTWSSDLIL 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01441 417 Coils Coil 47 81 - -
Aann4g01441 417 MobiDBLite consensus disorder prediction 109 132 - -
Aann4g01441 417 Pfam V-type ATPase 116kDa subunit family 3 406 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Aann4g01441 417 PANTHER VACUOLAR PROTON ATPASES 2 406 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Aann4g01441 417 MobiDBLite consensus disorder prediction 109 134 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01441 K02154 V-type H+-transporting ATPase subunit a
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Event-related genes

Select Gene_1 Gene_2 Event_name
518 Aann1g03430 Aann4g01441
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:71959019 Aann9g01271 Aann-Chr9:43212842 dispersed
Aann Aann-Chr4:71946152 Aann4g01441 Aann-Chr4:71959019 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g00179 . 2 1021 Primary Pumps ATPases gene family AT3G57330 67.638 0.0 1445.0
Aann1g00227 . 819 868 Primary Pumps ATPases gene family AT2G24520 38.333 5.95e-07 42.4
Aann1g01705 . 1 261 Primary Pumps ATPases gene family AT3G58730 81.609 2.00e-159 441.0
Aann1g01718 ACH 46 979 Primary Pumps ATPases gene family AT1G63440 56.884 0.0 1066.0
Aann1g02647 ACH 1 70 Primary Pumps ATPases gene family AT5G55290 80.0 1.10e-38 120.0
Aann1g02830 . 648 674 Primary Pumps ATPases gene family AT4G37270 62.963 4.71e-07 44.3
Aann1g03169 . 351 974 Primary Pumps ATPases gene family AT1G63440 39.51 2.49e-121 391.0
Aann1g03430 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 77.97 0.0 1320.0
Aann1g03829 ACH 1 1216 Primary Pumps ATPases gene family AT1G17500 72.177 0.0 1841.0
Aann1g04119 . 229 565 Primary Pumps ATPases gene family AT1G78900 27.35 2.66e-27 114.0
Aann1g04312 . 2 487 Primary Pumps ATPases gene family AT1G20260 95.885 0.0 958.0
Aann1g04428 . 1 1020 Primary Pumps ATPases gene family AT1G27770 77.843 0.0 1610.0
Aann1g04517 . 450 544 Primary Pumps ATPases gene family AT5G44790 66.316 2.60e-33 122.0
Aann1g04687 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 74.784 0.0 1265.0
Aann1g04697 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Aann1g05458 . 1 954 Primary Pumps ATPases gene family AT1G80660 82.932 0.0 1624.0
Aann1g05518 ACH 437 770 Primary Pumps ATPases gene family AT1G15690 89.349 0.0 595.0
Aann1g05519 . 256 316 Primary Pumps ATPases gene family AT1G15690 78.689 7.19e-31 111.0
Aann1g05533 . 5 770 Primary Pumps ATPases gene family AT1G15690 88.12 0.0 1368.0
Aann1g05594 . 506 534 Primary Pumps ATPases gene family AT1G07670 65.517 3.45e-06 39.7
Aann1g05610 . 1 48 Primary Pumps ATPases gene family AT4G29900 49.057 3.50e-06 40.8
Aann1g05637 . 1 1014 Primary Pumps ATPases gene family AT4G37640 79.232 0.0 1625.0
Aann1g05742 . 1 220 Primary Pumps ATPases gene family AT4G11150 68.182 9.01e-109 310.0
Aann1g06059 . 1 1177 Primary Pumps ATPases gene family AT5G23630 75.616 0.0 1836.0
Aann1g06332 . 854 1001 Primary Pumps ATPases gene family AT5G44790 85.811 1.93e-76 243.0
Aann1g06333 . 1 761 Primary Pumps ATPases gene family AT5G44790 63.144 0.0 979.0
Aann1g06565 . 1 976 Primary Pumps ATPases gene family AT1G10130 84.135 0.0 1702.0
Aann1g07160 ACH 5 104 Primary Pumps ATPases gene family AT4G23710 73.0 2.71e-44 138.0
Aann2g00295 . 826 864 Primary Pumps ATPases gene family AT5G57110 79.487 1.34e-16 68.9
Aann2g00925 . 47 236 Primary Pumps ATPases gene family AT5G13450 60.526 3.06e-84 249.0
Aann2g02933 ACH 1 770 Primary Pumps ATPases gene family AT1G15690 88.831 0.0 1382.0
Aann2g02985 . 6 849 Primary Pumps ATPases gene family AT3G42640 78.318 0.0 1358.0
Aann2g03136 . 4 949 Primary Pumps ATPases gene family AT2G18960 85.835 0.0 1633.0
Aann2g03162 . 8 1073 Primary Pumps ATPases gene family AT5G57110 71.216 0.0 1546.0
Aann2g03193 ACH 589 951 Primary Pumps ATPases gene family AT4G30110 36.184 3.07e-55 195.0
Aann2g03194 ACH 5 556 Primary Pumps ATPases gene family AT4G30110 67.69 0.0 793.0
Aann2g03492 . 1 623 Primary Pumps ATPases gene family AT1G78900 93.098 0.0 1207.0
Aann2g03493 . 1 623 Primary Pumps ATPases gene family AT1G78900 93.258 0.0 1210.0
Aann2g03559 . 361 388 Primary Pumps ATPases gene family AT5G57350 71.429 4.04e-07 42.7
Aann2g04724 . 1 1060 Primary Pumps ATPases gene family AT1G07670 80.038 0.0 1734.0
Aann2g05529 . 24 1016 Primary Pumps ATPases gene family AT3G63380 56.971 0.0 1109.0
Aann2g05533 . 7 1016 Primary Pumps ATPases gene family AT3G63380 69.064 0.0 1345.0
Aann2g05536 . 882 992 Primary Pumps ATPases gene family AT3G63380 68.468 3.59e-53 176.0
Aann2g05537 . 23 317 Primary Pumps ATPases gene family AT3G63380 58.054 1.50e-96 312.0
Aann2g06048 . 329 397 Primary Pumps ATPases gene family AT5G44240 76.812 7.03e-33 116.0
Aann2g06188 . 354 982 Primary Pumps ATPases gene family AT1G63440 35.758 6.94e-116 376.0
Aann3g00459 . 37 1158 Primary Pumps ATPases gene family AT5G04930 66.111 0.0 1555.0
Aann3g00486 . 5 1001 Primary Pumps ATPases gene family AT5G44790 72.338 0.0 1461.0
Aann3g00505 . 840 868 Primary Pumps ATPases gene family AT4G29900 79.31 5.22e-08 49.7
Aann3g00575 . 495 560 Primary Pumps ATPases gene family AT5G44790 69.697 1.19e-24 92.8
Aann3g00736 . 40 382 Primary Pumps ATPases gene family AT4G38510 29.769 2.72e-30 121.0
Aann3g01069 . 1 1014 Primary Pumps ATPases gene family AT4G37640 79.31 0.0 1658.0
Aann3g01378 ACH 1 351 Primary Pumps ATPases gene family AT3G28710 92.877 0.0 698.0
Aann3g01386 . 10 960 Primary Pumps ATPases gene family AT3G47950 87.487 0.0 1691.0
Aann3g01508 . 1 1187 Primary Pumps ATPases gene family AT3G27870 72.613 0.0 1820.0
Aann3g01772 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 29.177 1.04e-29 120.0
Aann3g01973 . 1 261 Primary Pumps ATPases gene family AT3G58730 72.137 4.77e-135 379.0
Aann3g02189 ACH 3 165 Primary Pumps ATPases gene family AT1G19910 99.387 1.06e-111 313.0
Aann3g02809 . 49 383 Primary Pumps ATPases gene family AT1G15700 31.124 3.92e-28 110.0
Aann3g04631 ACH 4 104 Primary Pumps ATPases gene family AT4G23710 70.297 6.95e-45 139.0
Aann3g05021 . 1 1014 Primary Pumps ATPases gene family AT4G37640 81.023 0.0 1674.0
Aann3g05336 ACH 1 351 Primary Pumps ATPases gene family AT3G28715 93.447 0.0 699.0
Aann3g06171 . 1 484 Primary Pumps ATPases gene family AT5G23630 51.653 9.77e-146 451.0
Aann4g00553 . 142 226 Primary Pumps ATPases gene family AT4G33520 65.882 1.20e-35 122.0
Aann4g01440 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 78.492 0.0 1316.0
Aann4g01441 ACH 52 456 Primary Pumps ATPases gene family AT4G39080 72.906 0.0 624.0
Aann4g01442 . 510 580 Primary Pumps ATPases gene family AT2G21410 90.141 3.81e-41 141.0
Aann4g02585 . 1 1050 Primary Pumps ATPases gene family AT4G00900 75.594 0.0 1631.0
Aann4g03052 . 1 203 Primary Pumps ATPases gene family AT5G47030 69.417 4.45e-103 294.0
Aann4g03923 . 3 948 Primary Pumps ATPases gene family AT4G30190 86.272 0.0 1646.0
Aann4g03947 . 8 1053 Primary Pumps ATPases gene family AT5G57110 71.766 0.0 1522.0
Aann4g04191 . 1 1061 Primary Pumps ATPases gene family AT1G07670 79.1 0.0 1724.0
Aann4g04555 . 926 1006 Primary Pumps ATPases gene family AT3G57330 72.84 2.48e-34 121.0
Aann4g04557 . 1 1021 Primary Pumps ATPases gene family AT3G57330 68.75 0.0 1451.0
Aann4g05034 . 617 643 Primary Pumps ATPases gene family AT2G21410 70.37 6.29e-07 43.5
Aann5g00276 . 17 233 Primary Pumps ATPases gene family AT4G09650 61.538 4.05e-89 262.0
Aann5g00691 ACH 1 70 Primary Pumps ATPases gene family AT5G55290 85.714 2.08e-41 127.0
Aann5g01040 . 1 374 Primary Pumps ATPases gene family AT1G12840 78.191 0.0 627.0
Aann5g01316 . 6 960 Primary Pumps ATPases gene family AT3G47950 91.937 0.0 1777.0
Aann5g01603 . 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Aann5g01604 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Aann5g01605 ACH 27 164 Primary Pumps ATPases gene family AT4G38920 99.275 3.17e-92 262.0
Aann5g01966 . 1 487 Primary Pumps ATPases gene family AT4G38510 94.888 0.0 947.0
Aann5g02935 . 1 1203 Primary Pumps ATPases gene family AT1G17500 62.954 0.0 1560.0
Aann5g03222 . 543 740 Primary Pumps ATPases gene family AT3G13900 59.701 2.54e-78 252.0
Aann5g03223 . 783 926 Primary Pumps ATPases gene family AT1G17500 70.139 2.72e-66 216.0
Aann5g03224 . 988 1162 Primary Pumps ATPases gene family AT1G17500 48.0 1.93e-57 192.0
Aann5g03226 . 3 1211 Primary Pumps ATPases gene family AT1G72700 57.516 0.0 1451.0
Aann5g03619 ACH 1 165 Primary Pumps ATPases gene family AT1G19910 98.788 1.20e-112 315.0
Aann5g04099 . 12 1212 Primary Pumps ATPases gene family AT1G59820 72.199 0.0 1862.0
Aann5g04828 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 29.177 9.79e-30 120.0
Aann5g04968 . 13 1189 Primary Pumps ATPases gene family AT1G68710 71.73 0.0 1792.0
Aann6g00515 ACH 1 235 Primary Pumps ATPases gene family AT1G64200 75.319 6.03e-124 349.0
Aann6g00586 . 275 458 Primary Pumps ATPases gene family AT1G78900 29.73 1.50e-16 75.1
Aann6g00660 . 54 990 Primary Pumps ATPases gene family AT1G63440 75.88 0.0 1471.0
Aann6g01067 . 1 180 Primary Pumps ATPases gene family AT4G32530 91.111 5.25e-112 315.0
Aann6g01129 . 7 817 Primary Pumps ATPases gene family AT2G28520 79.285 0.0 1315.0
Aann6g01187 . 1 440 Primary Pumps ATPases gene family AT3G42050 77.556 0.0 732.0
Aann6g02022 ACH 41 979 Primary Pumps ATPases gene family AT1G63440 55.154 0.0 1041.0
Aann6g02475 . 29 423 Primary Pumps ATPases gene family AT5G23630 46.771 1.36e-120 378.0
Aann6g02559 ACH 51 851 Primary Pumps ATPases gene family AT1G16780 82.404 0.0 1357.0
Aann6g02666 . 34 383 Primary Pumps ATPases gene family AT1G15700 69.274 4.05e-176 493.0
Aann6g03127 ACH 1 236 Primary Pumps ATPases gene family AT1G64200 76.695 7.46e-126 354.0
Aann6g03398 . 9 126 Primary Pumps ATPases gene family AT4G02620 87.395 6.39e-75 216.0
Aann6g03643 . 683 751 Primary Pumps ATPases gene family AT1G80660 69.565 3.89e-25 95.1
Aann6g04235 . 6 961 Primary Pumps ATPases gene family AT3G60330 79.249 0.0 1550.0
Aann6g04732 . 799 1022 Primary Pumps ATPases gene family AT3G63380 30.667 1.11e-28 111.0
Aann6g04733 . 309 769 Primary Pumps ATPases gene family AT3G63380 29.046 3.44e-44 164.0
Aann7g00936 . 18 1150 Primary Pumps ATPases gene family AT5G04930 68.301 0.0 1642.0
Aann7g01505 . 252 320 Primary Pumps ATPases gene family AT1G68710 47.826 1.06e-15 69.3
Aann7g02731 ACH 2 949 Primary Pumps ATPases gene family AT4G30110 54.404 0.0 998.0
Aann7g03102 ACH 6 770 Primary Pumps ATPases gene family AT1G15690 88.235 0.0 1368.0
Aann7g03563 . 33 1139 Primary Pumps ATPases gene family AT5G44240 82.13 0.0 1922.0
Aann8g00648 . 21 1213 Primary Pumps ATPases gene family AT1G59820 72.18 0.0 1858.0
Aann8g00973 ACH 58 442 Primary Pumps ATPases gene family AT1G20260 29.177 9.07e-30 120.0
Aann8g01233 . 1 1017 Primary Pumps ATPases gene family AT3G63380 66.829 0.0 1323.0
Aann8g01234 . 1 1016 Primary Pumps ATPases gene family AT3G63380 67.255 0.0 1339.0
Aann8g01236 . 1 1016 Primary Pumps ATPases gene family AT3G63380 67.745 0.0 1340.0
Aann8g02065 . 843 890 Primary Pumps ATPases gene family AT1G27770 47.917 1.12e-07 45.8
Aann8g02278 . 13 1021 Primary Pumps ATPases gene family AT3G57330 67.85 0.0 1402.0
Aann8g02374 . 608 720 Primary Pumps ATPases gene family AT1G15690 65.517 9.96e-42 144.0
Aann8g02375 . 436 556 Primary Pumps ATPases gene family AT1G15690 90.909 6.65e-67 215.0
Aann9g00158 ACH 1 118 Primary Pumps ATPases gene family AT1G17500 62.5 5.02e-52 173.0
Aann9g00451 ACH 2 768 Primary Pumps ATPases gene family AT1G15690 87.875 0.0 1371.0
Aann9g00466 . 1 954 Primary Pumps ATPases gene family AT1G80660 83.543 0.0 1631.0
Aann9g00890 . 43 382 Primary Pumps ATPases gene family AT4G38510 28.962 4.08e-29 118.0
Aann9g01271 ACH 14 821 Primary Pumps ATPases gene family AT4G39080 74.444 0.0 1272.0
Aann9g01545 . 6 960 Primary Pumps ATPases gene family AT3G47950 90.262 0.0 1754.0