AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01482 ATGGCGGCTGCATCTTCCCACCTTCATCTCCAAACACCCCTCTTCAAAACCCTACCCAAAACCCCACTCCCAAACACCCCAAAACCCTTCTTCAAACCCACTCCAACAAAACCCTTTACCATCAAAGCAGTCATCTCCCAAACACCCCCACAAACCCAGAAATTCACCCACTGTTTCACCAAACAAGAAGATGGGTACTTATATGTTGAGAAAACCAAAGTTGAGGAGATAATGCAAGTGGTGGAAAAAAGACCATTTTATTTGTACAGCAAGGCTCAAATTACAAGAAATGTGGAGGCTTATAAAGAGGCTTTGGAGGGTTTGGATAATAGTGTTATTGGTTATGCTATAAAAGCTAATAATAATTTCTTGATTTTGAACCATTTGAGGAGTTTGGGTTGTGGGGCTGTTTTGGTTAGTGGTAATGAGTTGAGGTTGGCTTTGAAAGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAATGGTAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGAGTATTTGTTAACATAGACAGTGAATTTGATTTGGATAATATTGTATCGGCTGCAAGAATTGCTGGAAAGAAAGTCAATGTATTGCTTCGAATCAATCCTGATGTTGACCCTCAGGTCCATCCTTATGTTGCAACCGGAAACAAGAACTCCAAATTCGGTATCAGAAATGAAAAATTGCAATGGTTTTTGGATCAAGTGAAGTCGTATCCTGATGAACTTAAGCTAGTTGGTGCTCATTGCCATCTTGGATCAACCATTACCAAGGTTGACATATTTAGAGACGCTGCAGAAATTATGGTGAAGTTCATTGACGAAATTCGAGCCCAAGGGTTTGATATTAGTTATTTGAACATTGGAGGTGGTCTTGGGATTGATTATTATCATACTGGCACCGTTCTTCCAACACCAAGAGATCTCATCGACACGGTGCGGGATCTAGTCAAGTCTCGAAACCTTAATCTGATTATTGAACCCGGGAGGTCACTTATTGCGAATACTTGCTGCCTTGTTAACCGCGTCACTGGTGTCAAAACAAATGGCACGAAAAACTTTATTGTGATTGATGGCAGCATGGCTGAACTCATCCGTCCTAGTTTGTACGATGCTTATCAACACATAGAGCTAGTTTCTCCTCCACCACCTGATGCTGCTGTTTCGACTTTTGACGTTGTGGGCCCGGTTTGCGAGTCTGCCGATTTCTTGGGAAAGAATAGGGAACTTCCTGCTCCAGCCAGGGGTTCTGGGCTTGTAGTTCATGATGCGGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCTGAGTACTGGGTTGAAGAAGATGGATCGGTTTCCAAAATCAGGCATGGGGAGACTTTTGACGATCATATGAGATACTTCGAGGGACTCTAG 1434 42.89 MAAASSHLHLQTPLFKTLPKTPLPNTPKPFFKPTPTKPFTIKAVISQTPPQTQKFTHCFTKQEDGYLYVEKTKVEEIMQVVEKRPFYLYSKAQITRNVEAYKEALEGLDNSVIGYAIKANNNFLILNHLRSLGCGAVLVSGNELRLALKAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKSYPDELKLVGAHCHLGSTITKVDIFRDAAEIMVKFIDEIRAQGFDISYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRDLVKSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDAAVSTFDVVGPVCESADFLGKNRELPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFDDHMRYFEGL 477
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01482 477 CDD PLPDE-III-DapDC 85 452 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 PANTHER DIAMINOPIMELATE DECARBOXYLASE 51 473 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Aann4g01482 477 Hamap Diaminopimelate decarboxylase [lysA]. 74 475 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 330 349 IPR000183 GO:0003824(InterPro)
Aann4g01482 477 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 135 147 IPR000183 GO:0003824(InterPro)
Aann4g01482 477 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 248 261 IPR000183 GO:0003824(InterPro)
Aann4g01482 477 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 115 133 IPR000183 GO:0003824(InterPro)
Aann4g01482 477 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 431 444 IPR000183 GO:0003824(InterPro)
Aann4g01482 477 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 284 299 IPR022657 -
Aann4g01482 477 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 115 133 IPR022653 -
Aann4g01482 477 PRINTS Diaminopimelate decarboxylase signature 221 230 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 PRINTS Diaminopimelate decarboxylase signature 441 463 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 PRINTS Diaminopimelate decarboxylase signature 358 376 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 PRINTS Diaminopimelate decarboxylase signature 133 150 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 FunFam Diaminopimelate decarboxylase 91 337 - -
Aann4g01482 477 SUPERFAMILY PLP-binding barrel 84 341 IPR029066 -
Aann4g01482 477 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 341 431 IPR022643 GO:0003824(InterPro)
Aann4g01482 477 SUPERFAMILY Alanine racemase C-terminal domain-like 317 472 IPR009006 GO:0003824(InterPro)
Aann4g01482 477 FunFam Diaminopimelate decarboxylase 319 471 - -
Aann4g01482 477 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 84 471 IPR009006 GO:0003824(InterPro)
Aann4g01482 477 NCBIfam diaminopimelate decarboxylase 60 472 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Aann4g01482 477 Gene3D Alanine racemase 91 337 IPR029066 -
Aann4g01482 477 Coils Coil 91 111 - -
Aann4g01482 477 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 92 340 IPR022644 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01482 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:73356764 Aann4g05211 Aann-Chr4:172430935 dispersed
Aann Aann-Chr4:73348470 Aann4g01482 Aann-Chr4:73356764 proximal