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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01492 ATGGCAAAGTGTTCATATGTTTTTTGTGCGGTTCTTCTGATTTTCGTACTTGCTATCGGAGAAATAGAGGCCGCTGGTTCAAAGCTGTGTGAAAAGACAAGCAAGACGTGGTCCGGTAAGTGCGACAACAAGAAATGTGACAAAAAGTGTATAGAGTGGGAGAAAGCACAACATGGTGCTTGTCACAAGAGAGAAGCCGGTAAAGAAAGTTGCTTTTGCTACTTTGACTGTTCCAAATCGCCTCCTGGAGCGACACCAGCGCCTCCTGGAGCGGCTCCTCCCCCAGCTGCTGGTGGCTCTCCACCACCTCCCGCTGATGGTGGCTCACCACCTCCTCCAGCTGATGGTGGATCTCCTCCTGCCGATGGTGGCTCTCCACCTCCTCCGTCCGCTCACTAA 399 52.38 MAKCSYVFCAVLLIFVLAIGEIEAAGSKLCEKTSKTWSGKCDNKKCDKKCIEWEKAQHGACHKREAGKESCFCYFDCSKSPPGATPAPPGAAPPPAAGGSPPPPADGGSPPPPADGGSPPADGGSPPPPSAH 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01492 132 SMART gth-4 29 77 IPR003614 GO:0006952(InterPro)
Aann4g01492 132 SUPERFAMILY Scorpion toxin-like 28 77 IPR036574 -
Aann4g01492 132 Gene3D - 25 77 IPR036574 -
Aann4g01492 132 PANTHER DEFENSIN-LIKE PROTEIN 1 1 77 - GO:0006952(PANTHER)
Aann4g01492 132 MobiDBLite consensus disorder prediction 82 132 - -
Aann4g01492 132 MobiDBLite consensus disorder prediction 81 132 - -
Aann4g01492 132 Pfam Gamma-thionin family 28 77 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01492 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:73529739 Aann4g01492 Aann-Chr4:73622125 tandem
Aann Aann-Chr4:73622125 Aann4g01493 Aann-Chr4:73631517 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g03383 . 3 78 Plant Defensins gene family AT1G19610 45.0 4.56e-21 77.4
Aann1g03385 . 17 78 Plant Defensins gene family AT1G19610 56.452 8.23e-23 80.5
Aann1g03386 . 17 78 Plant Defensins gene family AT1G19610 58.065 2.84e-23 81.6
Aann1g03388 . 1 78 Plant Defensins gene family AT1G19610 51.19 2.54e-26 90.9
Aann3g00103 . 2 73 Plant Defensins gene family AT5G63660 61.644 7.48e-27 91.3
Aann4g01486 . 1 78 Plant Defensins gene family AT1G19610 51.282 2.73e-26 91.7
Aann4g01491 . 7 78 Plant Defensins gene family AT1G19610 42.466 3.03e-13 61.2
Aann4g01492 . 13 78 Plant Defensins gene family AT1G19610 49.254 4.09e-18 71.6
Aann4g01493 . 13 78 Plant Defensins gene family AT1G19610 49.254 4.00e-18 71.6
Aann4g01496 . 13 78 Plant Defensins gene family AT1G19610 57.576 1.85e-24 87.4
Aann4g01497 . 15 78 Plant Defensins gene family AT1G19610 48.438 1.75e-19 73.9
Aann4g01498 . 13 78 Plant Defensins gene family AT1G19610 51.515 5.58e-22 80.9
Aann5g02655 . 1 77 Plant Defensins gene family AT2G02130 47.619 7.48e-23 81.6
Aann5g02656 . 3 77 Plant Defensins gene family AT2G02100 48.75 3.54e-23 82.4
Aann5g05145 . 1 77 Plant Defensins gene family AT2G02120 55.128 1.18e-28 96.3
Aann5g05214 . 24 68 Plant Defensins gene family AT2G02130 42.222 7.19e-08 42.4
Aann5g05215 . 1 77 Plant Defensins gene family AT2G02120 61.538 8.04e-32 103.0
Aann7g02120 . 10 77 Plant Defensins gene family AT2G02130 38.235 7.98e-12 53.1
Aann7g02121 . 10 76 Plant Defensins gene family AT1G61070 38.235 6.76e-13 55.8
Aann7g02123 . 12 76 Plant Defensins gene family AT1G61070 37.879 1.05e-11 53.1
Aann7g02124 . 8 76 Plant Defensins gene family AT1G61070 34.783 6.58e-10 48.1
Aann7g02125 . 12 76 Plant Defensins gene family AT1G61070 37.879 3.92e-12 55.1
Aann8g02623 . 26 76 Plant Defensins gene family AT1G19610 58.824 2.25e-17 68.9