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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01509 ATGATCTTCTTGTTACTTTGTTACTATTGTTACTTGTTACTTTTTTACTCATTATCTAACACGATTATCAATGACCGTGAGACAGGAAGATCACGAGGCTTCGGGTTCGTGACATTCAAAGAAGAGTCATCACTACGTGACGCCATCGAAGGAATGAACGGCCAAAGCCTTGACGGACGCAACATAACTGTTAACGAGGCTCAGTCAAGGAGCGGTGGTGGTGGTGGCGGCGGTGGAGGTCGCCGTGAAGGTGGTGGTGGTGGATATGGTGGCGGCGGTGGTGGTTATGGTGGTGGCCGTCGTGAAGGCGGTGGCGGATATGGTGGTGGAAGGAGGGAAGGTGGTTACGGCGGCGGTGGTGGTGGTGGTGGAAACTGGAGGGATTAG 387 52.71 MIFLLLCYYCYLLLFYSLSNTIINDRETGRSRGFGFVTFKEESSLRDAIEGMNGQSLDGRNITVNEAQSRSGGGGGGGGGRREGGGGGYGGGGGGYGGGRREGGGGYGGGRREGGYGGGGGGGGNWRD 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01509 128 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 69 IPR000504 GO:0003723(InterPro)
Aann4g01509 128 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 21 113 IPR051106 -
Aann4g01509 128 MobiDBLite consensus disorder prediction 57 128 - -
Aann4g01509 128 Pfam RNA recognition motif 20 63 IPR000504 GO:0003723(InterPro)
Aann4g01509 128 SUPERFAMILY RNA-binding domain, RBD 21 99 IPR035979 GO:0003676(InterPro)
Aann4g01509 128 SMART rrm1-1 7 65 IPR000504 GO:0003723(InterPro)
Aann4g01509 128 Gene3D - 18 98 IPR012677 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01509 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:73938552 Aann5g00418 Aann-Chr5:14291524 dispersed
Aann Aann-Chr4:73918494 Aann4g01509 Aann-Chr4:73938552 proximal