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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01607 ATGGGTAGCTTTAATCTATCTCATGAGCTAAACTTTGATTTCAAACCAACTTTCTTGCCCAAAACAATCACTAGCTTTCTTGAACAAGTGTCCAAATTCGGTAATGTGACCGAGAAGGTACTAAAACTTGATGATTTTGTTAACCGGTTAGAAACCGAAAAAAGTAAAGTAGAAGTGTTTAAGCAAGAACTCCCTCTATGCATGCTCCTCATCAATGATGCAATTGTTGCATTAAAAGAGGAATCAAATGTGTTAAAGAAATCGTTGCATGTCGAGCCAGTACTTGAAGAATTTATACCACTCAAGAATAGTTGTGATGATGATGCAAAAGTTGAAATTGTTGCAAATGAAAATGATAATGGTGATAAGAAGAATTGGTTGAGCTCTACACATCTTTGGAACACTAATGAGAACCTGGAGACGGTGGAAGAAAAAGAGGAAAGGAGAGCGGTTTTTAGCCCCGAAATCAAGAATCTGATGAAGGGAAATGGTTTGCTTACTGAAATCAATGGTGATAGTAAATTGATTTCATGTTCTACGCCAAATATGCAAACAAACGCACGAATTGGTGGGATTGTCCCTTTGCCATCACAACAACAGACATCTAGGAAGCAAAGGAGATGTTGGTCAACCGAATTGCATAGACGATTTGTCAATGCGTTGGAAGAACTTGGAGGATCACAAGTAGCCACGCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTCACCAATGACGAAGTGAAAAGCCATTTACAAAAATATAGACTTCATACGCGAAGGCTTCCATCTTCAAATACAAATCAATCTAGTCTCGCTGTCGGAGGAGGATTATGGATGTCTAAAGGTGGCAATTCTCAGTCCGGGTCTCCGGATGGGCCTCTCACGAACGGTGAAAACAACATGGATGATGAAGAAGAAGAGAAATCCGAGAATTATTGTTGGAATCCTTAA 957 39.6 MGSFNLSHELNFDFKPTFLPKTITSFLEQVSKFGNVTEKVLKLDDFVNRLETEKSKVEVFKQELPLCMLLINDAIVALKEESNVLKKSLHVEPVLEEFIPLKNSCDDDAKVEIVANENDNGDKKNWLSSTHLWNTNENLETVEEKEERRAVFSPEIKNLMKGNGLLTEINGDSKLISCSTPNMQTNARIGGIVPLPSQQQTSRKQRRCWSTELHRRFVNALEELGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSSNTNQSSLAVGGGLWMSKGGNSQSGSPDGPLTNGENNMDDEEEEKSENYCWNP 318
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01607 318 MobiDBLite consensus disorder prediction 260 298 - -
Aann4g01607 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 261 IPR017930 -
Aann4g01607 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 314 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Aann4g01607 318 SUPERFAMILY Homeodomain-like 201 262 IPR009057 -
Aann4g01607 318 MobiDBLite consensus disorder prediction 258 318 - -
Aann4g01607 318 Pfam Myb-like DNA-binding domain 206 257 IPR001005 -
Aann4g01607 318 Coils Coil 43 63 - -
Aann4g01607 318 Gene3D - 203 261 - -
Aann4g01607 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 259 IPR006447 GO:0003677(InterPro)
Aann4g01607 318 FunFam Myb family transcription factor 203 261 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01607 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
493 Aann1g03326 Aann4g01607
1668 Aann2g04272 Aann4g01607
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:67758311 Aann4g01607 Aann-Chr4:76586935 dispersed
Aann Aann-Chr4:76586935 Aann7g03247 Aann-Chr7:110296092 dispersed
Aann Aann-Chr1:83268518 Aann4g01607 Aann-Chr4:76586935 wgd
Aann Aann-Chr2:120203698 Aann4g01607 Aann-Chr4:76586935 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g01366 ACH 3 387 G2-like Transcription Factor family AT3G04030 54.962 4.09e-121 353.0
Aann1g01993 ACH 1 270 G2-like Transcription Factor family AT4G13640 62.593 1.24e-111 321.0
Aann1g02983 ACH 14 189 G2-like Transcription Factor family AT3G12730 63.636 8.51e-72 224.0
Aann1g03326 ACH 4 301 G2-like Transcription Factor family AT2G03500 37.025 3.67e-48 166.0
Aann1g04577 . 81 228 G2-like Transcription Factor family AT5G42630 57.516 2.27e-49 164.0
Aann2g00238 . 5 143 G2-like Transcription Factor family AT2G42660 45.27 7.50e-32 119.0
Aann2g01353 . 21 110 G2-like Transcription Factor family AT2G02060 60.44 7.72e-30 111.0
Aann2g01494 ACH 10 324 G2-like Transcription Factor family AT1G25550 51.841 2.42e-100 300.0
Aann2g02273 . 7 178 G2-like Transcription Factor family AT2G01060 49.133 1.95e-52 170.0
Aann2g04272 ACH 6 317 G2-like Transcription Factor family AT2G03500 37.612 2.35e-56 189.0
Aann2g04328 . 107 173 G2-like Transcription Factor family AT2G40260 61.194 3.19e-21 85.1
Aann2g04829 ACH 1 312 G2-like Transcription Factor family AT3G46640 40.566 4.37e-60 191.0
Aann2g04964 . 46 174 G2-like Transcription Factor family AT2G40260 54.135 4.61e-35 130.0
Aann2g05385 ACH 6 374 G2-like Transcription Factor family AT4G28610 48.354 2.81e-97 295.0
Aann3g00632 . 1 403 G2-like Transcription Factor family AT5G16560 41.042 3.92e-73 234.0
Aann3g04154 . 44 172 G2-like Transcription Factor family AT2G40260 61.24 3.70e-44 155.0
Aann4g01292 . 276 324 G2-like Transcription Factor family AT5G06800 69.388 2.20e-15 68.6
Aann4g01293 . 192 242 G2-like Transcription Factor family AT5G06800 70.909 1.37e-19 83.2
Aann4g01308 . 259 307 G2-like Transcription Factor family AT2G03500 49.091 1.44e-08 48.5
Aann4g01607 ACH 12 307 G2-like Transcription Factor family AT4G37180 38.782 2.68e-54 179.0
Aann4g04500 . 23 335 G2-like Transcription Factor family AT3G10760 48.75 7.31e-69 215.0
Aann4g05242 . 45 173 G2-like Transcription Factor family AT2G40260 61.24 1.61e-40 145.0
Aann5g00520 ACH 14 229 G2-like Transcription Factor family AT3G12730 52.995 2.40e-71 218.0
Aann5g02501 . 36 417 G2-like Transcription Factor family AT2G20570 47.761 5.40e-93 284.0
Aann5g03035 ACH 1 386 G2-like Transcription Factor family AT1G32240 48.821 4.93e-87 267.0
Aann5g04937 ACH 2 326 G2-like Transcription Factor family AT1G25550 41.026 8.20e-72 225.0
Aann6g00822 ACH 192 279 G2-like Transcription Factor family AT1G32240 79.775 2.75e-43 148.0
Aann6g02393 ACH 1 276 G2-like Transcription Factor family AT3G24120 66.787 2.72e-128 364.0
Aann6g02562 . 9 80 G2-like Transcription Factor family AT2G01060 90.278 4.64e-42 139.0
Aann7g00556 ACH 17 387 G2-like Transcription Factor family AT3G04030 49.474 4.99e-104 308.0
Aann7g02249 . 40 335 G2-like Transcription Factor family AT5G29000 47.022 3.17e-73 231.0
Aann7g02425 . 112 173 G2-like Transcription Factor family AT2G40260 60.317 1.82e-16 70.1
Aann7g03247 . 1 432 G2-like Transcription Factor family AT2G03500 48.14 2.12e-127 375.0
Aann8g00503 . 172 324 G2-like Transcription Factor family AT5G06800 65.806 8.61e-66 211.0
Aann8g00749 . 22 290 G2-like Transcription Factor family AT1G69580 48.936 3.92e-75 232.0
Aann8g01421 ACH 56 376 G2-like Transcription Factor family AT4G28610 51.039 1.20e-95 290.0
Aann8g02028 ACH 1 312 G2-like Transcription Factor family AT3G46640 48.266 5.43e-78 239.0
Aann8g02071 . 260 317 G2-like Transcription Factor family AT4G28610 53.448 2.08e-13 60.5
Aann8g02736 . 5 257 G2-like Transcription Factor family AT2G01060 69.847 1.40e-118 340.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aann Myb_DNA-binding 5.6e-07 CL0123 TF GARP-G2-like