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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01615 ATGTATCTCTATCATGCATGCACCATTCAGTTTCGAATATTTAAATATGACCCGCCAAGTGATACCAACATACATCCACATAGCATTTATTTGCTACCAAATCTATGGAGCTTTTTGAGGTGCGACTTAAGATGGGCGAAACGTGTAGCAAGCACGACTCAAGGTGCAGGAGAAGGGTTTGAATTCGTGCTCAACAAATGGAAGCCATATTACTTTGCTTGTGGAGAAAGCAACGGTTTTCATTGCCAATCTGGAATGAAATTTTTTGTGATGCCATCGTTTCGTTGGCAATAA 294 40.48 MYLYHACTIQFRIFKYDPPSDTNIHPHSIYLLPNLWSFLRCDLRWAKRVASTTQGAGEGFEFVLNKWKPYYFACGESNGFHCQSGMKFFVMPSFRWQ 97
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01615 97 ProSiteProfiles Phytocyanin domain profile. 1 94 IPR003245 GO:0009055(InterPro)
Aann4g01615 97 Gene3D - 8 93 IPR008972 -
Aann4g01615 97 PANTHER GLYCINE-RICH PROTEIN-LIKE 13 96 - -
Aann4g01615 97 SUPERFAMILY Cupredoxins 14 92 IPR008972 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01615 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:76703839 Aann4g01617 Aann-Chr4:76728721 dispersed
Aann Aann-Chr4:76672060 Aann4g01615 Aann-Chr4:76703839 tandem
Aann Aann-Chr4:76703839 Aann4g01616 Aann-Chr4:76705739 tandem