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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01683 ATGGATTCCAACAAGCAAACCTTTGTTGAACAAGATTCAGAAATGATGCAAAATCTGTCATGTGAAAAGGAGAAAAAAAGGAAGAGGGTGCCTAAAGAGCCTAAAGATAAACAGATTATGTTGGATAAACCCAAAAAGGCTTCGGGTAAGGGAAAAAGAACGAAATTGTGTGACATATATAACGATCCGGAAGATCAATATATGTGTATGGAACGAGCAGCCACCGTATTGGAAACTCTAGACGAAGGGTTACCTAAGTTTGGAAAATGTATGCTCCCGTCAAATGTTCTCTACAGTTTTTGGTTGATTTTACCGAGTAAATTCTGTGTCAATCATTTGCCTGAGCATGATACGACAGTTATTCTTGTGGATGAGTCGGGAAAAGAGTTTAAGACAAATTATCTCAAAGTAAGGCACGGTTTAAGTGCCGGATGGAGGGGATTTACAGTTGCACAAAGGTTACTTCAGGGCGACATTCTGTTTTTCCGTCTCATTGAACCCTGCAAACTACAGGTGAACATAGTAAGACGATATGATCTAGAAGCCATAGAAGCAGCTGATTGTTTAATGGAAATGCATCCTCGTGCTAAAAAAGTGAGGGTGTCAAATTACTTTGATAAAGCGGGAGAACCTAAAAAAGAAAGACGCAAGTGTAAAAAAGCTAAGGAAGAATTTGAAGATGAACTGAAGTATCAAACCCCGATTCCTGTACAAATGACAAAAGGCAAGCGAACTAAAAGAAGCCCAAAAAAGTTCATAGCAAGACTCTCGTTAGATTTTTGTTCAAATCAAGGAGTGACCAATGAAGAAGATGGTGAAAGAGTTTCGTGTGTGGACCAATGTGGAAATAGTAGTGATGGGTTGGGCTCAGAAGTACTTCAAGGCTCGACATCAGAGATGACCAATCAATCACAAGCCGAGGAGGACGGGTGCTACAAACTGAATCTGGGCTGCCATGAATCGACTGCTGAGAGAATATTTCATTCCCCTACGGTTACAGCATAA 1005 40.4 MDSNKQTFVEQDSEMMQNLSCEKEKKRKRVPKEPKDKQIMLDKPKKASGKGKRTKLCDIYNDPEDQYMCMERAATVLETLDEGLPKFGKCMLPSNVLYSFWLILPSKFCVNHLPEHDTTVILVDESGKEFKTNYLKVRHGLSAGWRGFTVAQRLLQGDILFFRLIEPCKLQVNIVRRYDLEAIEAADCLMEMHPRAKKVRVSNYFDKAGEPKKERRKCKKAKEEFEDELKYQTPIPVQMTKGKRTKRSPKKFIARLSLDFCSNQGVTNEEDGERVSCVDQCGNSSDGLGSEVLQGSTSEMTNQSQAEEDGCYKLNLGCHESTAERIFHSPTVTA 334
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01683 334 SUPERFAMILY DNA-binding pseudobarrel domain 81 176 IPR015300 -
Aann4g01683 334 MobiDBLite consensus disorder prediction 17 51 - -
Aann4g01683 334 MobiDBLite consensus disorder prediction 1 51 - -
Aann4g01683 334 Pfam B3 DNA binding domain 87 177 IPR003340 GO:0003677(InterPro)
Aann4g01683 334 Gene3D - 67 180 IPR015300 -
Aann4g01683 334 ProSiteProfiles B3 DNA-binding domain profile. 87 178 IPR003340 GO:0003677(InterPro)
Aann4g01683 334 Coils Coil 9 29 - -
Aann4g01683 334 CDD B3-DNA 85 176 IPR003340 GO:0003677(InterPro)
Aann4g01683 334 MobiDBLite consensus disorder prediction 1 16 - -
Aann4g01683 334 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 178 IPR044837 -
Aann4g01683 334 SMART B3-2 87 178 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01683 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
1673 Aann2g04301 Aann4g01683
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:77728869 Aann4g01683 Aann-Chr4:77783829 proximal
Aann Aann-Chr4:129120637 Aann4g01683 Aann-Chr4:77783829 transposed
Aann Aann-Chr2:121404125 Aann4g01683 Aann-Chr4:77783829 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g00109 . 81 313 B3 DNA Binding Superfamily AT3G26790 41.525 1.24e-47 158.0
Aann1g02481 . 17 113 B3 DNA Binding Superfamily AT4G21550 35.714 3.83e-14 69.7
Aann1g02484 . 323 426 B3 DNA Binding Superfamily AT4G21550 42.056 3.84e-24 98.6
Aann1g02485 . 321 427 B3 DNA Binding Superfamily AT4G21550 43.636 1.13e-24 100.0
Aann1g02486 ACH 31 103 B3 DNA Binding Superfamily AT4G21550 47.945 1.29e-19 86.7
Aann1g02487 ACH 279 385 B3 DNA Binding Superfamily AT4G32010 44.444 5.47e-24 96.3
Aann1g04400 . 37 210 B3 DNA Binding Superfamily AT5G42700 48.588 1.25e-53 168.0
Aann1g05776 ACH 115 252 B3 DNA Binding Superfamily AT3G19184 42.029 1.24e-35 132.0
Aann1g05780 ACH 112 234 B3 DNA Binding Superfamily AT3G19184 40.0 4.80e-24 99.4
Aann1g05789 ACH 115 230 B3 DNA Binding Superfamily AT3G19184 47.414 6.50e-32 121.0
Aann1g05837 ACH 16 141 B3 DNA Binding Superfamily AT4G01580 38.76 6.70e-24 94.0
Aann1g05838 . 9 299 B3 DNA Binding Superfamily AT5G66980 24.839 6.44e-23 96.3
Aann1g07169 ACH 4 593 B3 DNA Binding Superfamily AT4G30080 56.77 0.0 621.0
Aann2g00177 ACH 1 483 B3 DNA Binding Superfamily AT2G33860 51.303 4.65e-167 488.0
Aann2g01433 . 170 289 B3 DNA Binding Superfamily AT1G05930 34.921 4.05e-11 61.2
Aann2g01435 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.061 8.25e-11 57.0
Aann2g01436 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.008 1.94e-10 58.9
Aann2g01437 . 136 245 B3 DNA Binding Superfamily AT4G03170 29.167 6.24e-07 47.8
Aann2g01438 . 122 289 B3 DNA Binding Superfamily AT1G05930 26.744 1.79e-10 57.4
Aann2g01439 . 76 245 B3 DNA Binding Superfamily AT4G03170 27.624 6.19e-08 49.7
Aann2g01449 . 170 314 B3 DNA Binding Superfamily AT1G05930 30.719 6.86e-12 62.0
Aann2g02007 . 7 777 B3 DNA Binding Superfamily AT4G32010 48.091 0.0 701.0
Aann2g03308 ACH 1 488 B3 DNA Binding Superfamily AT1G19220 67.928 0.0 651.0
Aann2g04301 ACH 75 199 B3 DNA Binding Superfamily AT5G42700 43.2 1.29e-29 107.0
Aann2g04302 ACH 1 225 B3 DNA Binding Superfamily AT3G19184 60.345 1.55e-80 241.0
Aann2g05812 . 170 289 B3 DNA Binding Superfamily AT1G05930 33.333 5.15e-10 57.8
Aann2g05813 . 170 289 B3 DNA Binding Superfamily AT1G05930 33.333 5.59e-10 57.8
Aann2g05814 . 170 289 B3 DNA Binding Superfamily AT1G05930 33.333 4.32e-10 58.2
Aann3g00683 ACH 1 801 B3 DNA Binding Superfamily AT5G37020 66.141 0.0 999.0
Aann3g01145 . 286 502 B3 DNA Binding Superfamily AT2G30470 51.327 5.36e-68 222.0
Aann3g01151 ACH 105 230 B3 DNA Binding Superfamily AT3G19184 42.857 1.83e-27 104.0
Aann3g01152 ACH 107 230 B3 DNA Binding Superfamily AT3G19184 45.968 1.22e-30 113.0
Aann3g01191 . 4 140 B3 DNA Binding Superfamily AT5G66980 37.324 1.51e-22 89.4
Aann3g01450 . 641 714 B3 DNA Binding Superfamily AT2G30470 40.476 7.37e-13 67.4
Aann3g01984 ACH 22 130 B3 DNA Binding Superfamily AT3G18960 29.73 1.69e-10 58.2
Aann3g03227 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 1.81e-11 62.0
Aann3g03228 . 189 289 B3 DNA Binding Superfamily AT1G05930 35.714 5.18e-11 59.7
Aann3g03230 . 170 289 B3 DNA Binding Superfamily AT1G05930 34.921 3.93e-12 63.2
Aann3g03271 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 2.22e-09 55.1
Aann3g03272 . 170 289 B3 DNA Binding Superfamily AT1G05930 32.258 4.59e-10 57.0
Aann3g04652 ACH 1 670 B3 DNA Binding Superfamily AT4G30080 56.268 0.0 707.0
Aann3g05557 . 71 212 B3 DNA Binding Superfamily AT3G26790 44.366 3.43e-36 129.0
Aann3g05683 ACH 2 686 B3 DNA Binding Superfamily AT2G28350 51.888 0.0 650.0
Aann3g05711 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 54.775 0.0 745.0
Aann4g00317 . 611 639 B3 DNA Binding Superfamily AT1G59750 75.862 5.63e-09 48.1
Aann4g00318 . 2 609 B3 DNA Binding Superfamily AT1G59750 67.897 0.0 834.0
Aann4g00319 . 2 639 B3 DNA Binding Superfamily AT1G59750 68.147 0.0 878.0
Aann4g01680 ACH 46 205 B3 DNA Binding Superfamily AT5G42700 43.75 3.59e-41 145.0
Aann4g01683 ACH 47 199 B3 DNA Binding Superfamily AT5G42700 38.312 8.23e-30 111.0
Aann4g01970 . 170 660 B3 DNA Binding Superfamily AT4G32010 37.2 1.87e-86 290.0
Aann4g01973 . 641 698 B3 DNA Binding Superfamily AT2G30470 50.0 2.58e-14 65.9
Aann4g02087 ACH 1 590 B3 DNA Binding Superfamily AT2G33860 50.082 0.0 532.0
Aann4g02266 . 1 480 B3 DNA Binding Superfamily AT1G30330 85.95 0.0 834.0
Aann4g03935 . 134 256 B3 DNA Binding Superfamily AT3G19184 47.154 7.44e-30 113.0
Aann4g04001 ACH 1 424 B3 DNA Binding Superfamily AT1G19220 69.86 0.0 592.0
Aann4g04498 . 156 193 B3 DNA Binding Superfamily AT5G62000 57.895 1.18e-08 49.3
Aann5g00889 ACH 264 398 B3 DNA Binding Superfamily AT2G30470 42.963 3.23e-29 114.0
Aann5g01036 ACH 53 850 B3 DNA Binding Superfamily AT5G62000 60.517 0.0 956.0
Aann5g02816 ACH 9 616 B3 DNA Binding Superfamily AT4G23980 60.252 0.0 689.0
Aann5g05725 . 384 441 B3 DNA Binding Superfamily AT5G60450 52.542 3.59e-10 51.6
Aann6g00254 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.308 2.15e-14 69.7
Aann6g00443 ACH 14 594 B3 DNA Binding Superfamily AT2G46530 58.569 0.0 679.0
Aann6g00898 . 282 367 B3 DNA Binding Superfamily AT4G32010 71.579 1.21e-43 149.0
Aann6g00988 . 6 231 B3 DNA Binding Superfamily AT4G00260 24.891 4.75e-12 63.5
Aann6g01413 . 13 669 B3 DNA Binding Superfamily AT4G30080 55.861 0.0 693.0
Aann6g01551 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.008 2.08e-09 53.1
Aann6g01957 ACH 4 693 B3 DNA Binding Superfamily AT2G28350 55.43 0.0 664.0
Aann6g01995 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 53.794 0.0 705.0
Aann6g03035 ACH 7 615 B3 DNA Binding Superfamily AT4G23980 58.346 0.0 696.0
Aann6g04346 . 292 353 B3 DNA Binding Superfamily AT1G59750 59.677 5.92e-20 80.5
Aann6g04349 . 243 353 B3 DNA Binding Superfamily AT1G59750 56.757 4.09e-38 141.0
Aann7g00058 . 37 900 B3 DNA Binding Superfamily AT1G19850 60.407 0.0 980.0
Aann7g00780 . 2 210 B3 DNA Binding Superfamily AT4G00260 29.577 2.46e-18 80.9
Aann7g01174 ACH 1 794 B3 DNA Binding Superfamily AT5G37020 66.545 0.0 1019.0
Aann7g02689 ACH 1 495 B3 DNA Binding Superfamily AT5G20730 65.029 0.0 626.0
Aann7g03529 ACH 1 477 B3 DNA Binding Superfamily AT1G19220 75.911 0.0 737.0
Aann7g03951 . 204 294 B3 DNA Binding Superfamily AT5G18000 36.735 1.92e-08 50.8
Aann8g00674 . 10 326 B3 DNA Binding Superfamily AT5G66980 24.189 1.68e-10 60.1
Aann8g00688 . 2 225 B3 DNA Binding Superfamily AT4G00260 27.778 2.16e-18 82.8
Aann8g01721 . 4 217 B3 DNA Binding Superfamily AT5G58280 53.304 5.40e-72 222.0
Aann8g01745 ACH 5 733 B3 DNA Binding Superfamily AT4G32010 46.503 0.0 664.0
Aann9g00615 ACH 14 844 B3 DNA Binding Superfamily AT5G62000 58.76 0.0 951.0
Aann9g00618 . 806 856 B3 DNA Binding Superfamily AT5G62000 49.02 3.82e-08 45.4
Aann9g01060 . 4 220 B3 DNA Binding Superfamily AT3G19184 54.667 5.58e-70 214.0
Aann9g01062 . 1 228 B3 DNA Binding Superfamily AT3G19184 46.888 6.54e-53 170.0
Aann9g01063 . 1 220 B3 DNA Binding Superfamily AT3G19184 49.123 2.20e-56 179.0
Aann9g01065 . 1 220 B3 DNA Binding Superfamily AT3G19184 48.707 2.52e-61 192.0
Aann9g01066 . 8 229 B3 DNA Binding Superfamily AT3G19184 43.725 8.11e-49 160.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aann B3 2e-14 CL0405 TF B3