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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann4g01703 ATGGCGATTAATGTATCATCATCATCATCTTGGTGTGCTACTTATTTATTACCTCCTCAATCTCATTGTTATTCCACTAATCATGGATTTTCTTCTTTGTTTTTTGCAAACACCACTAATTATCTCAAGATCAATAATAATAATAATTATTCAAATGTGTCATCGATTAAACACCGATCTGATCTACGTGTCATGTCTTCTATGCGACGACCCTTAAAAGCAACAGTGGTGACCGGACAGTCATGGAACACATCAGTTCTCGACAGCAAAACACCAGTACTAGTTGAGTTCTACGCCAGTTGGTGTGGACCATGCCAGATGGTGCACCGAGTGATTGATGAGATTGCAGGCGAGTATGCTGGTAAGGTCAAGTGTTTCATGCTGAATGCTGACCAAGACCCACTAATCGCCGAAGAATATGACATCAAGGCTGTACCCATTGTGCTGTTATTCAAGAACGGTCAGAAATGTGAGTCAGTGGTTGGGACCATGCCGAAAGAATTCTACGTGGCTGCTATCGAAAGGGTCTTGTCATCTTCATCTTGA 546 41.76 MAINVSSSSSWCATYLLPPQSHCYSTNHGFSSLFFANTTNYLKINNNNNYSNVSSIKHRSDLRVMSSMRRPLKATVVTGQSWNTSVLDSKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGKVKCFMLNADQDPLIAEEYDIKAVPIVLLFKNGQKCESVVGTMPKEFYVAAIERVLSSSS 181
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann4g01703 181 Gene3D Glutaredoxin 74 180 - -
Aann4g01703 181 FunFam Thioredoxin 68 180 - -
Aann4g01703 181 ProSiteProfiles Thioredoxin domain profile. 68 178 IPR013766 -
Aann4g01703 181 PRINTS Thioredoxin family signature 101 110 - -
Aann4g01703 181 PRINTS Thioredoxin family signature 141 152 - -
Aann4g01703 181 PRINTS Thioredoxin family signature 93 101 - -
Aann4g01703 181 SUPERFAMILY Thioredoxin-like 74 179 IPR036249 -
Aann4g01703 181 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Aann4g01703 181 Pfam Thioredoxin 75 173 IPR013766 -
Aann4g01703 181 CDD TRX-family 85 174 - -
Aann4g01703 181 PANTHER GEO12009P1 58 177 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann4g01703 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
1676 Aann2g04319 Aann4g01703
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:56953398 Aann4g01703 Aann-Chr4:78075694 dispersed
Aann Aann-Chr4:78075694 Aann7g02671 Aann-Chr7:100010711 dispersed
Aann Aann-Chr2:121824496 Aann4g01703 Aann-Chr4:78075694 wgd