AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann5g04697 ATGGATTACTCTCCGGCGACTCGCCGGACGACACCAGACCTCTACTCAACCTTCGTAGTTCACAGCGATGAAGAAGACAATCAAAACGACGACGAATCACTCCCTCCACTTCTCAAACGCTTACCTAAAGACTTCGGCGCCGCCGTTGATTCCGATGACGACGAAAGCATCTCCGGCACAATGATCGTCAAGCGCGTGGACCCCACGCGCCGTGGGAGAGATGACGAGTCAGACGACGATGAAAATGAGAGCATTTCAGGTACTATGATTGTGAAGACTAACCCTAGGCGCGTGGATTACACGCGCCGTCGAGATGAGGATGAGGAGGATGATGATGAGGATGAGGAAGGAGGTGGATTTGGTACGTTTGTGGTGAGATCGGATGAGAGAGAGGATGAGTCGGTATCGGGGACGTTTGTGAGGCGGAGTGTAGGTGGAGGAGGAATGTCGACGATGAGTAGAGCGGTAGCGAGTATGCAGGGAGTAGGGGAGGGGTTTGGGAAAGGGAAGGGGAAAACGTCGTCTTCGCAGGATGGTGACGGAGGGCATTCGAGGAAACGGACGAGTAAAATGTCGTCTGGTTCCATTGCGGATAGTATTACTAGAGAAGATCCGTCTACTAAGTATGAATTGCTTCATGAACTTGGAAAAGGTTCTTATGGGTCTGTCTACAAAGCTCGTGATTTAAAAACTTCGGAAATGGTCGCAATTAAAGTGATATCATTATCTGAAGGGGAAGAAGGGTATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCTAATGTTGTTCGTTATCTAGGAAGCTACCAGGGTGAGGAGTACCTCTGGATTGTAATGGAGTATTGTGGCGGAGGAAGTGTTGCTGATTTGATGAATGTTACAGATGAACCTCTAGAGGAGTACCAAATAGCATATATATGTAAGGAAGCATTGAAGGGCTTATCCTATTTGCACTCGATCTTCAAGGTGCATCGTGATATCAAGGGTGGTAATATCTTGTTGACTGAACAAGGAGAGGTGAAGTTGGGTGATTTTGGTGTTGCTGCACAGCTGACAAGGACGATGTCCAAACGTAATACGTTTATTGGTACTCCCCACTGGATGGCTCCTGAAGTTATCCAGGAGAGCCGATATGATGGGAAGGTGGATGTGTGGGCTCTTGGGGTGTCTGCAATCGAAATGGCAGAGGGCCTTCCTCCAAGATCAAATGTGCATCCAATGAGGGTGTTATTTATGATCTCCATCGAACCTGCTCCAATGCTTGAAGATAAAGAAAAATGGTCTCTTGTGTTCCATGATTTCATTGCAAAATGCCTTACAAAAGACCCTCGTATACGCCCCACTGCATCTGAGCTACTAAAGCATAAATTCATAGAAAAATGCAAAAATGGAGCTTCTGCAATGTTGCCAAAGCTCGAGAAGGCAAAGATAAATAGGGCTGCAATGGCATTGGAAGCAGAACACGTTTCTGAGACCATACCAGGATATGGGACACTTGGACCAAAAGTGAATGAAGCCTTTGGAGATACTGTCCCTTCTAAACCTCAACAAGTGCCCAATGGAGTACCTGCTGTAGGTGGTACAGTAAAAGCCGGTGGTTTGGAAGAGGCTGAAGAAGGTGATTTCGGAAGTGTTATAATTCATGGTGGAGTGGATATACATAAGACAGCTGCTAAAACACCGCTTCCAGCAGCAAAGGACCCCTCACACTCTTCAGCACGTGGTCAAAGTTTATCAATGGCTGATCCTGGGGAAGATTCAGTTAGTCCCTGGTTGACCAAAAAAGTTGGGGGATCTGCAGATACATTTCGTGCTGTTGAATCACCATCTACTGAACACACAGCACAAGCTATTGGAAGCAATGGCGCTGTCATCAGTGGCACAACCAAGAACGAAGGTGTTAATCGCAAAGCACTAGACAAGCTTTGGTCCATATATGCCGCTGGTAACACAGTGCCCATTCCGTTTTTGAGGGCAACTGATATCTCTCCCATTGCATTGTTGTCTGAGAATGTGCTTGGAAGTCAGCATCTTGATAATGTTGGCAACGTTGCTGTAGAAGCATTACAAGAGCTTTTCACAAGTGATGGGCAATCTAAAAAGAGTCGAAGACAAAACGAGCTGCCTCTCCCACCGAGTGTTTATCAGAGACTTACTTCAAGTCCAACATTGATGAATCTTGCGCAGGCTTTATCATATCATAAAATGTGCTACGAAGAGATGCCACTGCAAGAACTACAAGCGACACAGGAACAACAAACCATTCAGAACCTCTGTGACACCCTTAGAACTATTTTGCGGTTATAA 2322 46.21 MDYSPATRRTTPDLYSTFVVHSDEEDNQNDDESLPPLLKRLPKDFGAAVDSDDDESISGTMIVKRVDPTRRGRDDESDDDENESISGTMIVKTNPRRVDYTRRRDEDEEDDDEDEEGGGFGTFVVRSDEREDESVSGTFVRRSVGGGGMSTMSRAVASMQGVGEGFGKGKGKTSSSQDGDGGHSRKRTSKMSSGSIADSITREDPSTKYELLHELGKGSYGSVYKARDLKTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEPLEEYQIAYICKEALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSNVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFIAKCLTKDPRIRPTASELLKHKFIEKCKNGASAMLPKLEKAKINRAAMALEAEHVSETIPGYGTLGPKVNEAFGDTVPSKPQQVPNGVPAVGGTVKAGGLEEAEEGDFGSVIIHGGVDIHKTAAKTPLPAAKDPSHSSARGQSLSMADPGEDSVSPWLTKKVGGSADTFRAVESPSTEHTAQAIGSNGAVISGTTKNEGVNRKALDKLWSIYAAGNTVPIPFLRATDISPIALLSENVLGSQHLDNVGNVAVEALQELFTSDGQSKKSRRQNELPLPPSVYQRLTSSPTLMNLAQALSYHKMCYEEMPLQELQATQEQQTIQNLCDTLRTILRL 773
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann5g04697 773 PANTHER SERINE-THREONINE-PROTEIN KINASE TAO 184 496 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Aann5g04697 773 MobiDBLite consensus disorder prediction 162 204 - -
Aann5g04697 773 Gene3D Transferase(Phosphotransferase) domain 1 205 497 - -
Aann5g04697 773 MobiDBLite consensus disorder prediction 566 595 - -
Aann5g04697 773 SMART serkin-6 209 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Aann5g04697 773 FunFam serine-threonine-protein kinase dst1 isoform X1 206 497 - -
Aann5g04697 773 MobiDBLite consensus disorder prediction 1 147 - -
Aann5g04697 773 FunFam Aurora kinase A 201 290 - -
Aann5g04697 773 ProSiteProfiles Protein kinase domain profile. 209 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Aann5g04697 773 MobiDBLite consensus disorder prediction 188 202 - -
Aann5g04697 773 Pfam Protein kinase domain 209 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Aann5g04697 773 CDD STKc-MAP4K3-like 208 463 - -
Aann5g04697 773 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524(InterPro)
Aann5g04697 773 SUPERFAMILY Protein kinase-like (PK-like) 208 464 IPR011009 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann5g04697 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
13930 Aann Aann4g01028 Aann-Chr4:57291239 Aann5g04697 Aann-Chr5:147034027
19332 Aann Aann5g04697 Aann-Chr5:147034027 Aann9g00569 Aann-Chr9:14454213
39335 Aann Aann5g04697 Aann-Chr5:147034027 Aann2g03872 Aann-Chr2:105956954
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g06213 ACH 7 673 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 62.628 0.0 858.0
Aann2g03872 . 1 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 62.27 0.0 835.0
Aann3g00053 . 7 477 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G14480 51.575 1.54e-157 457.0
Aann3g01509 ACH 6 674 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 61.483 0.0 837.0
Aann3g05419 ACH 6 673 MAP Kinase Kinase Kinase Kinase Protein gene family AT5G14720 60.832 0.0 832.0
Aann4g01028 . 1 690 MAP Kinase Kinase Kinase Kinase Protein gene family AT3G15220 57.627 0.0 718.0
Aann5g00996 ACH 4 683 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 57.061 0.0 723.0
Aann5g02870 . 97 698 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G10730 57.571 0.0 720.0
Aann5g02871 . 23 76 MAP Kinase Kinase Kinase Kinase Protein gene family AT4G24100 62.963 4.23e-20 79.7
Aann5g04697 . 1 836 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G69220 59.07 0.0 889.0
Aann6g01693 ACH 63 262 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G53165 25.114 7.92e-08 53.9
Aann9g00569 ACH 4 683 MAP Kinase Kinase Kinase Kinase Protein gene family AT1G79640 53.399 0.0 696.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aann Pkinase 2.5e-70 CL0016 PK STE_STE20-Pl