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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann5g04703 ATGCCAACATTAACAAAGCTGTATACGATGAAAGAAGCATCAGAACATAATTCTGCTGGTGATTGTTGGGTCGTTATTGACGGCAAGGTGTATGATGTGTCATCGTATCTGGATGACCATCCAGGTGGAGATGATGTCCTCCTTCAGGCTACTGGGAAAGACGCTACAGAAGAATTTGAAGACGCAGGTCATAGCAAAACCGCTAGGGAACAAATGGAGAATTTTTGTGTCGGTGAGTTGGACCCATCAGACATCCCACAACTTGAGGTTGTCGCTGAGAAACAAAAGAATTACGTCCCTGAGAAGCTTGTTCAGTTGAGTAAGCAATACTGGGCTGTTCCTGTGGCAGCTGTTGGCATATCTGTGGTGGTCACCGTCTTGTACTTGCGCAAGAAGTAG 399 45.86 MPTLTKLYTMKEASEHNSAGDCWVVIDGKVYDVSSYLDDHPGGDDVLLQATGKDATEEFEDAGHSKTAREQMENFCVGELDPSDIPQLEVVAEKQKNYVPEKLVQLSKQYWAVPVAAVGISVVVTVLYLRKK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann5g04703 132 Gene3D - 3 86 IPR036400 -
Aann5g04703 132 PANTHER CYTOCHROME B5 4 126 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Aann5g04703 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Aann5g04703 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Aann5g04703 132 SMART Cyt-b5-2 8 81 IPR001199 -
Aann5g04703 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Aann5g04703 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Aann5g04703 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Aann5g04703 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Aann5g04703 132 FunFam Cytochrome b5 type B 3 85 - -
Aann5g04703 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Aann5g04703 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann5g04703 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr5:147250032 Aann6g04671 Aann-Chr6:140591766 dispersed
Aann Aann-Chr5:147250032 Aann4g02578 Aann-Chr4:91376426 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aann1g00226 . 6 83 NADPH P450 reductases gene family AT1G26340 38.462 2.28e-14 65.9
Aann1g03518 . 30 281 NADPH P450 reductases gene family AT5G17770 74.016 1.68e-140 395.0
Aann1g05619 . 38 273 NADPH P450 reductases gene family AT5G17770 38.76 3.32e-49 174.0
Aann1g05620 . 38 273 NADPH P450 reductases gene family AT5G17770 39.147 6.72e-49 173.0
Aann1g06322 . 38 273 NADPH P450 reductases gene family AT5G17770 38.372 2.42e-49 174.0
Aann2g02813 . 39 281 NADPH P450 reductases gene family AT5G17770 40.23 3.32e-65 203.0
Aann3g03031 ACH 1 133 NADPH P450 reductases gene family AT5G53560 70.677 5.69e-70 204.0
Aann3g03739 ACH 6 133 NADPH P450 reductases gene family AT5G53560 69.531 9.23e-67 197.0
Aann3g06051 . 2 120 NADPH P450 reductases gene family AT1G60660 62.185 4.36e-51 155.0
Aann4g00720 . 29 53 NADPH P450 reductases gene family AT5G53560 80.0 2.75e-10 49.7
Aann4g02578 ACH 1 126 NADPH P450 reductases gene family AT5G53560 53.846 4.29e-49 152.0
Aann4g04886 . 31 281 NADPH P450 reductases gene family AT5G17770 84.462 2.45e-162 450.0
Aann4g04945 . 7 133 NADPH P450 reductases gene family AT2G32720 76.378 3.41e-74 215.0
Aann4g05149 . 2 120 NADPH P450 reductases gene family AT1G60660 62.185 5.98e-51 155.0
Aann5g04703 . 1 134 NADPH P450 reductases gene family AT1G26340 62.687 1.73e-58 176.0
Aann6g02388 . 1 130 NADPH P450 reductases gene family AT2G32720 46.212 3.95e-41 132.0
Aann6g04671 ACH 1 134 NADPH P450 reductases gene family AT5G48810 51.493 5.23e-48 149.0
Aann7g01742 . 1 128 NADPH P450 reductases gene family AT5G53560 55.039 3.94e-51 157.0
Aann7g01743 . 23 132 NADPH P450 reductases gene family AT5G53560 52.137 2.69e-40 129.0
Aann8g00542 . 51 273 NADPH P450 reductases gene family AT5G17770 36.179 5.69e-41 146.0
Aann8g00544 . 33 276 NADPH P450 reductases gene family AT5G17770 36.09 1.72e-46 159.0