AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aann7g00674 ATGCCGGTGTCCCGACCAGAATCATCTGATTCGAGAATCATTGCTCATGTCGACATGGACTGCTTCTATGTTCAAGTGGAGCAACGGAAAAACCCTGATCTAAGAGGAAAACCAACTGCTGTTGTGCAATACAATTCTTGGAAAGGTGGAGGTCTAATTGCTGTCGGTTATGAGGCTCGAAAAGATGGGGTCAAACGTTCAATGAGAGGTGATGAGGCTAAAGAAGTTTGTCCAGAAATACATCTGGTACAAGTGCCTGTGGCACGTGGTAAAGCTGACTTGACCATATATCGGGATGCAGGTTCAGAGGTTGTTTCTATTCTTGCAAGAAAGGGACGATGTGAGCGTGCATCAATTGATGAAGTTTACCTTGACCTCACTGATGCTGCTGAAACAATGCTGAAAGAAACGCCACTTGAAAGCTTGGAAAGTATAGATGAGGAAGTTTTGAAATCACATGTTTTGGGACTTAGTTCGGATGGAAAGGATGACAGAGAAAGTGTGAGGGAATGGCTGCAGCGCAAAGATGCTGATCACCGTGATAAGCTGTTAGCATGTGGAGCCATTATTGTTGCTGAACTCAGGTTGCAAGTTTTGCGAGAGACCGAGTTTACATGTTCTGCAGGCGTTGCTCATAACAAAATGCTGGCAAAATTAGCAAGTGGTATGAATAAACCTGCACAACAAACTATTGTCACTTCCGCATCAGTAAAAGAGCTTCTTGAAACCTTGCCTGTAAAGAAAATGAAACAACTTGGTGGGAAGCTTGGGAGTTCATTGCAAACGGACCTAGGTGTGAATACCGTTGGAGATCTATTGCAATTTTCTGAAGAAAAACTACAAGATTTCTATGGTGTCAACACTGGTACTTGGCTATGGAATACTGCTCGAGGGATCAATGGGGACGAAGTTCAGGGCCGTTTGCTGCCTAAAAGCCATGGGTCTGGGAAAACATTTCCCGGAGTTAGGGCCCTAAAAACTGTTGTTGCTGTTGAAAAATGGCTGAAAGAACTCTGTGAAGAGTTAAATGAACGACTTCAGTCAGACCTGGTGAAGAATAAACGAATCGCGCATACACTTACTCTGTATGCTAATGCATACAAGTCAACAGATACAGAATCACACAAAAAGTTTCCTTCAAAGTCATGTCCTTTGAGATATGGAGCAGGAAAAATTATGGAAGATGCCGTAAATCTTTTCCAAGCTGCTTTACGTGAATACCTCGGGCCATATATCGGAAACCAGTGTGGTGGATGGGGAGTTACTAATCTATCTGTTTCAGCCAGTAAAATTGTTGCCATACCATCTGGAACGTCGTCGATCACAAAGTACTTTCATAGTCGAGATCAGTTAAACGATTCATCAGAACCGTTGGGTGAAAAGTTTGTACTTGAAGATGATCATGTGTCACCATCAAGTAGAACTGAAAGTCATCCGGCTTCTCATCAAATTGAATGTGGTGAGGAAGAGATTCCAATCACACATGATATCTCCAGTTCTGATCAATGTGAGACTGCATGTAAAGATGAGGCTAGTGGTGATATTGCCGGAGAAGCTTTCAAGTTATCATCACCAGGAACTGAAAGCTGTTCGACTTCAAAGCAGAAAGAGCAACAATCAAGGTTACATGGGAAAGAAACTAAAATGATGCACCCCAATGATGGAATAAAATCATATAATCAAAAGAGAAAGGCAACAAAAGAAAAGGGAACGTCTTCCATATTGCGATTTCTCCAAAGCAACTCTACCTCATCGTCAAAGCAAGACAATCTCACTCCTCTTCAAGAAACAAACTCTTTGTCCTTGGGCACACAAGAACCGTTGAATATACAGAGTCAAAGCTTGAGTCAAAATGTACAGACAACAAATGCTTGGAGTTACAAGGTAGATGAAATCGACCAATCAGTTATCGAAGAATTACCACTGGAAATACAGCAAGAATTTCGTACTTGGCTTCAGCCTCAGAAGAGGCCAAACATTATGAAACGAGGTTCTAGCATTGCTGATTACTTCTCTCCTACGAAAAACTAG 2031 42.05 MPVSRPESSDSRIIAHVDMDCFYVQVEQRKNPDLRGKPTAVVQYNSWKGGGLIAVGYEARKDGVKRSMRGDEAKEVCPEIHLVQVPVARGKADLTIYRDAGSEVVSILARKGRCERASIDEVYLDLTDAAETMLKETPLESLESIDEEVLKSHVLGLSSDGKDDRESVREWLQRKDADHRDKLLACGAIIVAELRLQVLRETEFTCSAGVAHNKMLAKLASGMNKPAQQTIVTSASVKELLETLPVKKMKQLGGKLGSSLQTDLGVNTVGDLLQFSEEKLQDFYGVNTGTWLWNTARGINGDEVQGRLLPKSHGSGKTFPGVRALKTVVAVEKWLKELCEELNERLQSDLVKNKRIAHTLTLYANAYKSTDTESHKKFPSKSCPLRYGAGKIMEDAVNLFQAALREYLGPYIGNQCGGWGVTNLSVSASKIVAIPSGTSSITKYFHSRDQLNDSSEPLGEKFVLEDDHVSPSSRTESHPASHQIECGEEEIPITHDISSSDQCETACKDEASGDIAGEAFKLSSPGTESCSTSKQKEQQSRLHGKETKMMHPNDGIKSYNQKRKATKEKGTSSILRFLQSNSTSSSKQDNLTPLQETNSLSLGTQEPLNIQSQSLSQNVQTTNAWSYKVDEIDQSVIEELPLEIQQEFRTWLQPQKRPNIMKRGSSIADYFSPTKN 676
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aann7g00674 676 Gene3D - 304 433 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Aann7g00674 676 Gene3D - 89 232 IPR043128 -
Aann7g00674 676 FunFam DNA polymerase eta 21 88 - -
Aann7g00674 676 Pfam DNApol eta-Rev1, HhH motif 244 299 - -
Aann7g00674 676 Pfam impB-mucB-samB family C-terminal domain 310 437 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Aann7g00674 676 PIRSF DNA-pol-eta 6 675 - -
Aann7g00674 676 FunFam DNA polymerase eta 304 432 - -
Aann7g00674 676 FunFam DNA polymerase eta 89 232 - -
Aann7g00674 676 MobiDBLite consensus disorder prediction 538 570 - -
Aann7g00674 676 ProSiteProfiles UmuC domain profile. 14 253 IPR001126 GO:0006281(InterPro)
Aann7g00674 676 FunFam Polymerase (DNA directed), eta 246 302 - -
Aann7g00674 676 SUPERFAMILY DNA-RNA polymerases 8 304 IPR043502 -
Aann7g00674 676 Gene3D - 246 302 - -
Aann7g00674 676 PANTHER DNA POLYMERASE ETA 1 662 IPR052230 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0005657(PANTHER)|GO:0009314(PANTHER)|GO:0035861(PANTHER)|GO:0042276(PANTHER)
Aann7g00674 676 MobiDBLite consensus disorder prediction 520 571 - -
Aann7g00674 676 Pfam impB-mucB-samB family 17 221 IPR001126 GO:0006281(InterPro)
Aann7g00674 676 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 309 433 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Aann7g00674 676 Gene3D - 21 88 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aann7g00674 K03509 DNA polymerase eta [EC:2.7.7.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aann Aann-Chr4:80209223 Aann7g00674 Aann-Chr7:44216127 dispersed