AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aary13g03118 | ATGGGTGATAGTCAGTACTCCTTTTCGCTAACTACTTTCAGTCCTTCTGGTAAGCTTGTTCAGATTGAACATGCCCTTACAGCTGTTGGATCGGGTCAAACTTCATTGGGGATTAAAGCTTCTAATGGGGTCGTGATTGCAACGGAAAAGAAGCTTCCATCCATTTTAGTCGACGAGACATCTGTGCAAAAGATCCAGATCTTGACTCCCAATATAGGAGTTGTATACAGTGGAATGGGGCCTGATTCTCGAGTTCTAGTCAGGAAGAGTAGGAAGCAGGCAGAGCAGTACCATCGGCTATACAAAGAGCCCATCCCTGTTACACAACTTGTAAGGGAAACCGCAGCTGTTATGCAAGAGTTTACTCAGTCTGGTGGTGTACGGCCTTTTGGTGTTTCACTCCTTGTTGCCGGTTATGATGACAAAGGTCCCCAACTTTATCAGGTGGACCCCTCAGGTTCTTATTTCTCCTGGAAAGCTTCGGCCATGGGAAAGAATGTGTCTAATGCAAAGACATTTTTAGAAAAGAGATACACTGATGATATGGAGCTTGAGGATGCGATACACACAGCTATTTTAACATTGAAGGAGGGATTTGAAGGACAAATATCTGGCAAAAACATTGAGATTGGTGTTATTGAGGCTGACAGAACATTCAGAGTTCTAACTGCAGCTCAGATTGAAGACTATCTTCAAGAAGTGGAATAG | 708 | 43.64 | MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADRTFRVLTAAQIEDYLQEVE | 235 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aary13g03118 | 235 | ProSiteProfiles | Proteasome alpha-type subunit profile. | 21 | 231 | IPR023332 | - | |
| Aary13g03118 | 235 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 3 | 235 | IPR029055 | - | |
| Aary13g03118 | 235 | CDD | proteasome-alpha-type-2 | 6 | 231 | - | - | |
| Aary13g03118 | 235 | ProSitePatterns | Proteasome alpha-type subunits signature. | 6 | 28 | IPR000426 | GO:0006511(InterPro)|GO:0019773(InterPro) | |
| Aary13g03118 | 235 | FunFam | Proteasome subunit alpha type | 3 | 235 | - | - | |
| Aary13g03118 | 235 | Pfam | Proteasome subunit | 31 | 213 | IPR001353 | GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Aary13g03118 | 235 | PANTHER | PROTEASOME SUBUNIT ALPHA-BETA | 4 | 232 | IPR050115 | GO:0010498(PANTHER)|GO:0019773(PANTHER) | |
| Aary13g03118 | 235 | SMART | Proteasome-A-N-2 | 6 | 28 | IPR000426 | GO:0006511(InterPro)|GO:0019773(InterPro) | |
| Aary13g03118 | 235 | Pfam | Proteasome subunit A N-terminal signature | 6 | 28 | IPR000426 | GO:0006511(InterPro)|GO:0019773(InterPro) | |
| Aary13g03118 | 235 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 5 | 234 | IPR029055 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aary13g03118 | K02726 | 20S proteasome subunit alpha 2 [EC:3.4.25.1] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Aary | Aary-Chr13:183990386 | Aary17g02064 | Aary-Chr17:132500436 | dispersed | |
| Aary | Aary-Chr10:62237983 | Aary13g03118 | Aary-Chr13:183990386 | transposed | |
| Aary | Aary-Chr17:162515487 | Aary13g03118 | Aary-Chr13:183990386 | transposed | |
| Aary | Aary-Chr4:43851753 | Aary13g03118 | Aary-Chr13:183990386 | transposed | |
| Aary | Aary-Chr10:65160424 | Aary13g03118 | Aary-Chr13:183990386 | transposed | |
| Aary | Aary-Chr13:183990386 | Aary5g02670 | Aary-Chr5:154550513 | wgd |