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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03123 ATGGCATCCAAGAAAAGTGTAAGTAGTTTGAAAGAAGGTGATTTGAAGGGAAAGAAAGTTTTTGTTAGAGCTGATTTGAATGTGCCTTTGGATGATAGTTTTAAGATCACAGATGACACGCGCATACGCGCTGCTGTTCCTACGATTAAATATTTGATGTCTAATGGCGCTAGGGTTATTCTATCGTCTCATTTGGGACGACCAAAGGGTGTTACACCCAAATACAGCCTTAAGCCACTTGTCAAGATGGCGGATGATTGCGTAGGTCCTGAGGTTGAGAAACTGGTGGCTGGGATTTCAGATGGAGGTGTTTTGCTTCTTGAAAATGTCAGGTTTTATAAAGAGGAAGAGAAGAACGATCCTGAATTTGCAAAGAAGCTTGCGTCACTAGCTGACTTGTATGTTAATGATGCATTTGGCACTGCACATAGGGCACATGCCTCTACAGAAGGTGTTGCCAAGTACTTGAAACCATCTGTTGCGGGATACCTCATGCAGAAGGAGCTTGACTATCTTGTTGGAGCTGTATCTAGTCCTAACAAACCATTTGCTGCAATTGTTGGAGGGTCAAAGGTTTCTAGTAAAATTGGTGTGATTGAGTCATTGTTAGAGAAGGTAAACGTCCTTGTGCTTGGTGGAGGTATGATATTCACCTTCTATAAAGCCCAAGGTTACAAAGTTGGGTCGTCTCTTGTGGAAGAAGATAAGCTTGACCTTGCAACATCACTTCTCGAAAAGGCCAAGTCCAAAGGAGTGTCTCTGCTACTCCCTTCTGATGCTGTAATTGCTGACAAATTTGCGGCAGATGCCAATAGCAAGGTGGTTCCCGCAAAAGAAATTCCTGATGACTGGATGGGATTGGACATTGGACCCGATTCTATCAAGTCGTTTAGTGAAACTTTAGATACTACCAAAACCATCATTTGGAATGGACCTATGGGTGTATTTGAGATGGAAAAGTTTGCTGCTGGAACAGAGGCTATTGCCAAGAAACTGGCAGAACTTAGCGGGAAGGGAGTTACTACCATCATTGGAGGTGGCGATTCTGTTGCAGCTGTGGAAAAGGTTGGGTTAGCAGACAAGATGAGCCACATTTCAACTGGTGGTGGTGCTAGTTTAGAGCTTCTTGAGGGAAAGACACTTCCTGGAGTGCTCGCCTTGAATGAAGCTTGA 1173 43.82 MASKKSVSSLKEGDLKGKKVFVRADLNVPLDDSFKITDDTRIRAAVPTIKYLMSNGARVILSSHLGRPKGVTPKYSLKPLVKMADDCVGPEVEKLVAGISDGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGYLMQKELDYLVGAVSSPNKPFAAIVGGSKVSSKIGVIESLLEKVNVLVLGGGMIFTFYKAQGYKVGSSLVEEDKLDLATSLLEKAKSKGVSLLLPSDAVIADKFAADANSKVVPAKEIPDDWMGLDIGPDSIKSFSETLDTTKTIIWNGPMGVFEMEKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALNEA 390
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03123 390 CDD Phosphoglycerate-kinase 10 389 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PIRSF Pgk 2 390 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 Gene3D - 11 387 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 Hamap Phosphoglycerate kinase [pgk]. 9 389 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 Gene3D - 163 379 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 FunFam Phosphoglycerate kinase 11 173 - -
Aary13g03123 390 PANTHER PHOSPHOGLYCERATE KINASE 3 389 IPR001576 GO:0004618(PANTHER)|GO:0004618(InterPro)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Aary13g03123 390 Pfam Phosphoglycerate kinase 11 379 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 SUPERFAMILY Phosphoglycerate kinase 8 389 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 130 152 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 184 203 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 365 382 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 342 353 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 161 183 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 306 331 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 PRINTS Phosphoglycerate kinase family signature 102 117 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Aary13g03123 390 FunFam Phosphoglycerate kinase 178 365 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03123 K00927 phosphoglycerate kinase [EC:2.7.2.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:184915165 Aary15g00395 Aary-Chr15:20858960 dispersed
Aary Aary-Chr13:184915165 Aary15g00388 Aary-Chr15:20651835 wgd