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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03190 ATGGGATCAGAACAACATTTTGGTTATAGAGCAACTGGTCAACCCTCATCTTACTCATCTCCCAAACCTCAAATCCCTTTATTACCCACAAGACGAATCGAATCCTTAAAGTTTGAATCAAGAGACTCACCCAATTCTCCCTTCGTAAACCCGTTTGATTCAGATATATTCACCACAAATAGTGATAGTCGAGAAAAATACAGCTCAACCTCAGGTGCTAGCCCTTCTTCCCTAGAAGATTGTAGCTCTGTTAACCCTTCAAGCAGTGCTCATTACATGATCAATGCGCTCCAAGATATAGAGACCACTCTAATGGCCCCAGATGATGACGTATCCATTCCCATTAACCCTTCTTATGGTCAAAACCAGTGGCCACAACTGTCAAACCAAAGGCCTATACAGTGGACCGATGAACCCACCAGTTCAAACATGGTTCAGCCCCAAGTTCTACATACTAATAGTAATCTAAAACAGTTGCTTATTGCGTGTGCAAGTGCACTTGCTGTAAACAAGCTTGATGAGTTTAAGGTCCTGGTTGAGCATGCTCGAGCTTTGGTGTCGATTAGTGGTGACCCAATACAGAGGCTAGGTGCTTATATGGTCGAAGGTTTGGTAGCTAGGCGGGAATTATCTGGGACTCACATATATCGAGCCTTAAGGTGTCGGGAACCCGAAGGTAAAGACTTACTTTCCTACATGCAAATCTTATACGATATATGCCCGTATTTGAAGTTCGGGTACATGGCTGCAAACGGTGCAATAGCAGAAGCTTGCAGAAATGAAGATCGAATCCACATCATCGACTTCCAAATAGCTCAAGGGACACAATGGATGACACTTCTGCAGGCTCTTGCTGCTAGACCTGGGGGCCCACCTCACGTCCGTATTACGGGAATTGACGATCCAGTTTCGAAATATGCACGTGGCGACAGTTTGGAGTTAGTTGGAAAACGGTTAGAAATGGTTTCTAAAAAGTTTAATATCTTGATTGAGTTTCACCCGCTTCCGGTTTACGCACCACACGTGACAAAATCGATGCTTGATGTAAGACCAGGTGAGGCCTTAGCAGTGAATTTCCCGCTTCAACTTCATCACATGCCCGACGAAAGTGTTGACGTGAATAATCCACGAGACGAACGGTTAAGAATGGTTAAATCGCTTTCGCCGAAAGTTGTTACTATAATCGAGCAAGAATCGAACACAAACACAGCTGCTTTCTTTCCTAGGTTCTTGGAAGCCCTTGACTATTACTCTGCAATGTTCGAGTCAATGGATGCAACTTCAACACGGGATAAAAAAGAACGAATAAACGTGGAACAGCATTGCTTGGCTCGAGACATAGTCAACATAATAGCATGTGAAGGTAAAGAAAGAGTTGAAAGACATGAGCTTTTCAAGAAGTGGAGGTCAAGGTTAACAATGGCGGGGTTTAAACAGTATCCGTTAAGTGGGTATGTAAATTCGGTTATCAGGGATTTGCTAAATTGCTACTCGAAGCATTATACATTGGTGGAAGAAGATGGAGCTATGCTGTTGGGTTGGAAAGAAAGAAATCTTATTTCAGCATCTGCTTGGCATTGA 1581 43.33 MGSEQHFGYRATGQPSSYSSPKPQIPLLPTRRIESLKFESRDSPNSPFVNPFDSDIFTTNSDSREKYSSTSGASPSSLEDCSSVNPSSSAHYMINALQDIETTLMAPDDDVSIPINPSYGQNQWPQLSNQRPIQWTDEPTSSNMVQPQVLHTNSNLKQLLIACASALAVNKLDEFKVLVEHARALVSISGDPIQRLGAYMVEGLVARRELSGTHIYRALRCREPEGKDLLSYMQILYDICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSKYARGDSLELVGKRLEMVSKKFNILIEFHPLPVYAPHVTKSMLDVRPGEALAVNFPLQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTIIEQESNTNTAAFFPRFLEALDYYSAMFESMDATSTRDKKERINVEQHCLARDIVNIIACEGKERVERHELFKKWRSRLTMAGFKQYPLSGYVNSVIRDLLNCYSKHYTLVEEDGAMLLGWKERNLISASAWH 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03190 526 MobiDBLite consensus disorder prediction 1 84 - -
Aary13g03190 526 ProSiteProfiles GRAS family profile. 147 526 IPR005202 -
Aary13g03190 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 525 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Aary13g03190 526 MobiDBLite consensus disorder prediction 40 84 - -
Aary13g03190 526 Pfam GRAS domain family 156 525 IPR005202 -
Aary13g03190 526 MobiDBLite consensus disorder prediction 9 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03190 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
60841 Aary Aary13g03190 Aary-Chr13:188848964 Aary15g00731 Aary-Chr15:34193734
133859 Aary Aary13g03190 Aary-Chr13:188848964 Aary15g00671 Aary-Chr15:31306430
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aary1g01216 . 248 650 GRAS Transcription Factor family AT3G54220 50.711 4.14e-144 426.0
Aary1g01610 . 4 767 GRAS Transcription Factor family AT1G07530 47.362 0.0 643.0
Aary1g02715 . 43 651 GRAS Transcription Factor family AT3G54220 61.161 0.0 723.0
Aary1g02784 ACH 37 486 GRAS Transcription Factor family AT4G36710 47.761 6.46e-135 398.0
Aary1g03127 . 86 768 GRAS Transcription Factor family AT1G07530 43.913 0.0 552.0
Aary1g03482 ACH,AST 174 640 GRAS Transcription Factor family AT5G52510 46.862 1.00e-123 375.0
Aary2g00590 . 4 482 GRAS Transcription Factor family AT1G50420 64.938 0.0 623.0
Aary2g00626 . 4 482 GRAS Transcription Factor family AT1G50420 65.145 0.0 623.0
Aary2g01674 . 135 507 GRAS Transcription Factor family AT1G66350 30.457 3.04e-55 192.0
Aary2g02112 AST 2 510 GRAS Transcription Factor family AT3G13840 48.502 1.05e-149 438.0
Aary2g02798 . 27 529 GRAS Transcription Factor family AT1G14920 48.444 1.88e-159 463.0
Aary3g01126 ACH 29 484 GRAS Transcription Factor family AT4G36710 47.89 2.06e-132 391.0
Aary3g01495 . 15 478 GRAS Transcription Factor family AT1G50420 36.831 2.17e-103 313.0
Aary3g01946 AST 53 413 GRAS Transcription Factor family AT2G04890 31.688 1.24e-53 183.0
Aary3g01947 AST 53 413 GRAS Transcription Factor family AT2G04890 31.948 1.33e-52 181.0
Aary4g01722 . 18 592 GRAS Transcription Factor family AT1G21450 54.778 0.0 602.0
Aary4g02239 . 59 581 GRAS Transcription Factor family AT3G46600 46.023 1.73e-164 479.0
Aary4g02242 . 385 764 GRAS Transcription Factor family AT1G07530 55.236 4.74e-159 469.0
Aary4g02243 . 86 766 GRAS Transcription Factor family AT1G07530 48.988 0.0 602.0
Aary4g02249 . 59 581 GRAS Transcription Factor family AT3G46600 45.833 4.74e-164 478.0
Aary4g02250 . 222 764 GRAS Transcription Factor family AT1G07530 45.848 1.89e-165 488.0
Aary4g02251 . 86 766 GRAS Transcription Factor family AT1G07530 48.988 0.0 602.0
Aary4g02839 . 41 582 GRAS Transcription Factor family AT2G01570 60.034 0.0 652.0
Aary4g02944 . 31 405 GRAS Transcription Factor family AT5G41920 65.116 6.18e-178 501.0
Aary5g00689 AST 1 555 GRAS Transcription Factor family AT4G00150 47.351 1.03e-157 461.0
Aary5g01651 . 2 767 GRAS Transcription Factor family AT1G07530 44.948 0.0 596.0
Aary5g01652 . 2 767 GRAS Transcription Factor family AT1G07530 43.928 0.0 593.0
Aary5g02558 . 140 596 GRAS Transcription Factor family AT1G50600 61.555 0.0 576.0
Aary5g02559 . 155 597 GRAS Transcription Factor family AT1G50600 59.911 0.0 545.0
Aary5g02775 . 20 400 GRAS Transcription Factor family AT5G41920 55.325 1.37e-140 414.0
Aary6g01573 . 1 479 GRAS Transcription Factor family AT1G50420 62.839 0.0 602.0
Aary6g02039 ACH,AST 204 555 GRAS Transcription Factor family AT4G00150 57.65 9.71e-142 422.0
Aary6g02320 . 141 530 GRAS Transcription Factor family AT4G37650 53.5 4.20e-142 414.0
Aary7g00473 . 23 444 GRAS Transcription Factor family AT1G55580 46.651 9.21e-121 357.0
Aary7g00629 . 64 490 GRAS Transcription Factor family AT5G48150 68.966 0.0 611.0
Aary7g00872 . 161 529 GRAS Transcription Factor family AT1G14920 35.369 2.07e-75 246.0
Aary7g01657 . 8 409 GRAS Transcription Factor family AT3G49950 44.869 2.24e-118 350.0
Aary7g01919 . 1 584 GRAS Transcription Factor family AT5G66770 51.424 5.01e-178 513.0
Aary7g02042 AST 1 530 GRAS Transcription Factor family AT4G37650 54.792 0.0 545.0
Aary7g02600 . 73 716 GRAS Transcription Factor family AT2G37650 51.897 0.0 641.0
Aary7g03487 . 40 444 GRAS Transcription Factor family AT1G55580 49.029 4.52e-122 359.0
Aary8g01245 AST 97 555 GRAS Transcription Factor family AT4G00150 40.0 8.91e-106 329.0
Aary8g01338 . 30 656 GRAS Transcription Factor family AT1G63100 52.119 0.0 555.0
Aary8g01360 . 30 656 GRAS Transcription Factor family AT1G63100 52.119 0.0 555.0
Aary9g00780 . 13 530 GRAS Transcription Factor family AT1G14920 61.754 0.0 648.0
Aary9g01652 ACH 32 640 GRAS Transcription Factor family AT5G52510 42.138 7.45e-128 388.0
Aary9g03368 . 309 353 GRAS Transcription Factor family AT1G50420 56.25 2.33e-06 41.6
Aary9g04073 . 86 555 GRAS Transcription Factor family AT4G00150 40.244 1.70e-103 321.0
Aary10g01394 . 296 650 GRAS Transcription Factor family AT3G54220 56.145 1.57e-143 425.0
Aary10g01928 . 4 482 GRAS Transcription Factor family AT1G50420 65.145 0.0 624.0
Aary10g02425 ACH,AST 175 640 GRAS Transcription Factor family AT5G52510 46.96 7.63e-123 373.0
Aary10g02840 . 86 768 GRAS Transcription Factor family AT1G07530 44.236 0.0 556.0
Aary10g03597 . 45 545 GRAS Transcription Factor family AT3G03450 63.127 0.0 662.0
Aary10g03598 . 45 545 GRAS Transcription Factor family AT3G03450 60.425 0.0 620.0
Aary10g05251 . 34 490 GRAS Transcription Factor family AT5G48150 68.33 0.0 627.0
Aary10g05456 AST 1 510 GRAS Transcription Factor family AT3G13840 47.842 8.77e-150 438.0
Aary10g05674 ACH,AST 540 600 GRAS Transcription Factor family AT5G59450 50.82 6.57e-14 72.4
Aary10g05833 . 27 529 GRAS Transcription Factor family AT1G14920 47.953 2.31e-158 461.0
Aary11g00596 . 165 529 GRAS Transcription Factor family AT1G14920 34.625 5.06e-69 229.0
Aary11g00597 . 165 529 GRAS Transcription Factor family AT1G14920 34.367 5.74e-69 229.0
Aary11g01756 . 11 478 GRAS Transcription Factor family AT1G50420 36.518 3.66e-102 310.0
Aary11g02077 . 141 507 GRAS Transcription Factor family AT1G66350 44.125 1.73e-99 313.0
Aary11g02327 AST 53 413 GRAS Transcription Factor family AT2G04890 31.948 4.03e-54 184.0
Aary11g02328 AST 53 413 GRAS Transcription Factor family AT2G04890 31.948 5.31e-53 182.0
Aary12g00286 . 263 370 GRAS Transcription Factor family AT3G03450 30.0 3.72e-09 50.8
Aary12g02098 . 59 581 GRAS Transcription Factor family AT3G46600 46.212 2.22e-165 482.0
Aary12g02099 . 52 588 GRAS Transcription Factor family AT5G59450 44.283 5.90e-143 424.0
Aary12g02100 . 86 766 GRAS Transcription Factor family AT1G07530 48.629 0.0 600.0
Aary12g02739 . 43 582 GRAS Transcription Factor family AT2G01570 60.241 0.0 652.0
Aary12g02920 . 31 405 GRAS Transcription Factor family AT5G41920 65.116 1.19e-177 501.0
Aary13g01325 ACH,AST 103 555 GRAS Transcription Factor family AT4G00150 51.6 4.93e-157 459.0
Aary13g03020 . 155 597 GRAS Transcription Factor family AT1G50600 60.356 0.0 548.0
Aary13g03021 . 140 596 GRAS Transcription Factor family AT1G50600 61.987 0.0 577.0
Aary13g03126 . 161 545 GRAS Transcription Factor family AT3G03450 34.559 7.17e-67 223.0
Aary13g03190 . 73 489 GRAS Transcription Factor family AT5G48150 57.309 5.32e-173 495.0
Aary13g03386 . 45 490 GRAS Transcription Factor family AT5G48150 57.965 0.0 525.0
Aary14g01759 . 1 479 GRAS Transcription Factor family AT1G50420 63.048 0.0 603.0
Aary14g02233 ACH,AST 204 555 GRAS Transcription Factor family AT4G00150 57.377 3.36e-141 420.0
Aary14g02461 . 141 530 GRAS Transcription Factor family AT4G37650 53.25 7.31e-142 413.0
Aary15g00407 . 23 444 GRAS Transcription Factor family AT1G55580 46.897 6.56e-120 355.0
Aary15g00671 . 64 490 GRAS Transcription Factor family AT5G48150 70.0 0.0 614.0
Aary15g00731 . 60 490 GRAS Transcription Factor family AT5G48150 69.585 0.0 614.0
Aary15g00860 . 161 529 GRAS Transcription Factor family AT1G14920 35.369 1.07e-74 244.0
Aary15g01627 . 8 409 GRAS Transcription Factor family AT3G49950 44.63 1.30e-117 348.0
Aary15g01841 . 1 584 GRAS Transcription Factor family AT5G66770 51.424 1.24e-177 512.0
Aary15g01916 AST 1 530 GRAS Transcription Factor family AT4G37650 54.973 0.0 547.0
Aary15g01925 . 12 409 GRAS Transcription Factor family AT3G49950 61.259 0.0 519.0
Aary15g02620 . 73 716 GRAS Transcription Factor family AT2G37650 51.976 0.0 644.0
Aary15g03239 . 40 444 GRAS Transcription Factor family AT1G55580 49.029 8.22e-123 361.0
Aary16g01202 AST 92 555 GRAS Transcription Factor family AT4G00150 40.421 5.19e-107 332.0
Aary16g01350 . 30 656 GRAS Transcription Factor family AT1G63100 52.119 0.0 555.0
Aary17g00809 . 1 530 GRAS Transcription Factor family AT1G14920 60.917 0.0 649.0
Aary17g01985 . 54 714 GRAS Transcription Factor family AT2G37650 45.066 0.0 554.0
Aary17g02004 . 54 714 GRAS Transcription Factor family AT2G37650 44.772 0.0 548.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aary GRAS 7.2e-128 CL0063 TF GRAS