AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03213 ATGGAGTATGAAAAAGAATTAGAAGTGGGTGTAAGAGTGGTTCAGTTAGCATGTTGTTTATGTCAAAAGATACAAAAGGGGTCATTTGGTCCTAACCCTGATCTTGTTGTTTCTAAACTTGATGATTCTCCTGTTACTGTTGCTGATTGGAGTGTACAAGCATTGATTAGTTGGATACTATCAGAATCATTCGGTAGAGAAAATGTCTCGATTGTCGCGGAAGAAGACACACAAACCCTTTCCGATGTCAAATCCACATCTTTATTAGCATCTGTGGTGACAACTGTTAACGAAAGTTTAGCGATGGCACCCCGGTTCGGTCTCAATGGACCAACCGCACCCCTCGAGGCTTCAGAAGTTCTTGATGCCATTAGCCGATGTAATTCAAGTGGTGGTCCAGTGGGAAGGCATTGGGTCCTTGACCCCGTTGATGGAACTTTAGGGTTTGTTCGTGGAGGTCAGTATGCGGTGGCTCTGGCTTTGATCGAAAATGGGCGGGTTGTGGTTGGGGTTCTTGGATGTCCTAATTATTCAAGTAAAAGGAAATTGGTTAATAATTCAAGTGTACCGAAATCAGATTTGTGGCAAGAAGGGTGTGTTATGTATACAAAGAGAGGTAGTGGTCAAGCTTGGATGCAGCCGTTGGTTTGTGGTGATGGGACACTTGAGTGGCCTAATTCGGCTAGTGTTATACAGGTTTCCTCCATTGATAATCCTGTTATGGCTACGTTTTGTGAACCGGTGGAAAAAGCTAACTCTAACCATTCGTATAGTGCTGGAATCGCTTACAGTTTAGGCCTTAGAAAGCAACCGTTGCGTGTTTATAGCATGGTAAAATATGCAGCCATAGCAAGGGGAGATGCAGAGATATACATGAAGTTTGCAAAAGCTGGATACAAGGAAAAGATATGGGATCATGCTGCTGGTGTGGTGATTGTTGAAGAAGCTGGTGGGGTTGTGACAGATGCGGGTGGCCGGCCTTTAGATTTTTCAAAAGGGGTGTATCTTGAAGGTCTTGATCGGGGGATCGTGGCATGTTCCGGGGTGAATTTGCATGAGAAAATTATAGGTGCTGTTTATGCAAGTTGGGATTCTTCTCACTTGTGA 1107 44.08 MEYEKELEVGVRVVQLACCLCQKIQKGSFGPNPDLVVSKLDDSPVTVADWSVQALISWILSESFGRENVSIVAEEDTQTLSDVKSTSLLASVVTTVNESLAMAPRFGLNGPTAPLEASEVLDAISRCNSSGGPVGRHWVLDPVDGTLGFVRGGQYAVALALIENGRVVVGVLGCPNYSSKRKLVNNSSVPKSDLWQEGCVMYTKRGSGQAWMQPLVCGDGTLEWPNSASVIQVSSIDNPVMATFCEPVEKANSNHSYSAGIAYSLGLRKQPLRVYSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGVYLEGLDRGIVACSGVNLHEKIIGAVYASWDSSHL 368
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03213 368 Gene3D - 1 219 - -
Aary13g03213 368 ProSitePatterns Inositol monophosphatase family signature 1. 138 151 IPR020583 -
Aary13g03213 368 CDD PAP-phosphatase 6 361 - -
Aary13g03213 368 PANTHER PHOSPHATASE 2 364 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Aary13g03213 368 SUPERFAMILY Carbohydrate phosphatase 3 361 - -
Aary13g03213 368 ProSitePatterns Inositol monophosphatase family signature 2. 304 318 IPR020550 GO:0046854(InterPro)
Aary13g03213 368 Gene3D - 232 362 - -
Aary13g03213 368 FunFam PAP-specific phosphatase HAL2-like 232 365 - -
Aary13g03213 368 Pfam Inositol monophosphatase family 42 360 IPR000760 -
Aary13g03213 368 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 3 366 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03213 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:190192324 Aary4g01603 Aary-Chr4:102216125 dispersed
Aary Aary-Chr5:161072420 Aary13g03213 Aary-Chr13:190192324 transposed
Aary Aary-Chr12:94285918 Aary13g03213 Aary-Chr13:190192324 wgd