AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03328 ATGAGTAAGGTATCAATGCCAAACAATGTAAAAAAGATGATCCAAAACATAAAAGAGATCACAGGTAATAATTACAGTGAAGATGAGATTTATTCCATGCTTAAAGAATGTTCCATGGATCCAAATCAAACCACTCACAACCTTCTCTCAATGGATCCATTTCATGAAGTTAAAAGGAAGCGTGATCGCAAGAAGGAGAATGTGAATAAAGAATCGACAGAGCCCAGACAGAAACCTGGGATGCAGGGGCGGGGGAATAGAGGTGGTCGAGGGAACTACTCAGCACGTCACATTTCTAATGGTGGTGGCAGGAACTCACTTCCTGCAAAAGAAAATGGAATCATTCAAGGTGTAGAGGATGGTCCAAATCAATCAATGCCTCAGGGTCAGAAGAAAAATGAGTCATTGGTTGCAAGCTCTTCTCGTGATGTACCTGAGGGTTCATCTGGTAAGAAGCAATCTGAAGCGTCTGCATCTACTGCAAGTAGTAAATTGGAGGGTCCGCTGCCACAGATCCCTCCTGTCGAGGCAAGTAAGGGTCCCATTGTCGCTGTCGTGTTTGGGAGCACACATGGATCTCTTTCCAATAACATATCAGCTTCTAAGACACCACCAGCTTCACCAGGGGTCTTACTCTCTGATTCAGATCCTATTCTGATGCCCTCACAAGATTCACGAGTGCCTGTGGGTACAATCAGACGGGAAGTTTGGAGTCAGAAAACTCCAGTTGAACAAATTCACGAGACCCCACGTGAGATAAAGTCAACTGCTTATGGGTCTGAGGGTGGAAACTTTTCCATGCAAGGGAAGGCATCCGGTGAGCTTCAGGGAGTGGGGAAGAATATAAATTCGGATTCTTCAAGACCAGGGTCATCTTCTCGTGTCTCCTTTTCTACTAGCAGGCCTTCTTCAAATCATAATAATAGGACGCAACAAGGGATTGGTCCTCAAAAAGTTGGGCCTAGTATGGAATGGAAACCGAAAGCAGTTAATCCTGTTCTTGCTCAAGGGACTGGGTCAGATGAGTCAGTTAAGATACCTGCGGTCCCAGTCGAAGATCACACTTCAACCCTGTCTGCATCCAATAATCTTGATTCGCAGGATACTACTCGTGAATTGGAGAAGAAGTTAGAGGAGTCGCACATTTCAGATGTGCATCATGTTATTATCCCAGATCATCTTCATGTTCCTGAAGCCGAAAAACTCGGGTTCTGCTTTGGGAGTTTTGATCCCAGTTTCGGTTTTAATGCAAGCTCGTCAAATGGTCCGGTGAGTGATGTGAGTTCTGAGGCTTCTGAGGTGGTTGATGAAAGTATTGAGGAGCAACCCAGAAATCAAAATGAATTGGCCAGCACTGATGAAGGTTATCAACCTGATCGTCCAACATCCTCTAGTAACATGCCCGAGAGTTTATCAGTTGACGGTGATGTCTCGTCAAACGTGGCCCCTGAGTACCAAGAGTCCAAGCAAGAGACTGCACTCCCAACCGCAGGCCATCAATACCCTGTTCACACATCACCTAATTTCAGCTTTGGTTTCATGCCACCAATGATTGGGAACCAGCTTTCATCTTTTGAAAGCAACGAGTCTCAGGGACGTGATGGTTTCCATGTCCCAAGTCTTGTAGTTCCACAACCATTTGACCCAGCTAGCTATTATGCCCAGTTCTACCATTCTGGTGCTGATGGTGATGGTCGCATGTCACCCTTCCACTCAACTGGTCCTACCAAGTTCAATGGAAATGTTCCAATGTTATCATCTCAGGAGGTTGGGAACTCCTTAATGCTGTCTGCTGCTGGTCCAACACCCGTAACTTCACAAACTGGTGCGGTTACTCAAGGCTCTATAGCCGTGACTCAGCAACCATTGCCTGTGTTCAGGCAGCCAACTGGGGTTCACCTGTCCCATTATCCTCCAAATTTTATGCCTTATGGTCCATATTTTTCCCCATATTATGTACATCCACATCCTATTCATCAATTTTTGAATAACGGTACATTCCCTCAACAACCTCAAGGTGGTAGTATGTATCCGGTCCCACCATTGGCTAGCCCTAAATATCCACTTCCACAATACAAGCCCGGAGGTAATGCAGGGAACTCGGGGCATATTGGAATGCCTGGTGGTTATGGACCTTATGGCTCTACCCCTGCAGGCTATAACCCTGGTTCAGCCACTACAGCTGGCAATTCGGCCTCCAATGAAGACCTTGGTGGGTCCCAGTTCAAGGAAAGTAATGCATACATGACTGGACAGCAGAGTGAAGGTCCGGGTGTATGGTATGCTGCACCAGGCCGAGACATGTTTGGATTACAGGCTAATTCTTTCCATAATCATTCACAAGGCGGTCAAGTTGCATACGGCACACAAGCTGGACATGGTGCATTTGCTGGTATTTATCACCCTGCACAACCAGTAACCACTGGAGCGATTCACCCTCATCTTCAACAGTCTGGAACCAGTGTTGACATGGTGGGACCCGCTGCTGGCATGTATCAGCAACCACAAAACGCTCAAATGAATTGGCCTAACAACTATTGA 2541 46.36 MSKVSMPNNVKKMIQNIKEITGNNYSEDEIYSMLKECSMDPNQTTHNLLSMDPFHEVKRKRDRKKENVNKESTEPRQKPGMQGRGNRGGRGNYSARHISNGGGRNSLPAKENGIIQGVEDGPNQSMPQGQKKNESLVASSSRDVPEGSSGKKQSEASASTASSKLEGPLPQIPPVEASKGPIVAVVFGSTHGSLSNNISASKTPPASPGVLLSDSDPILMPSQDSRVPVGTIRREVWSQKTPVEQIHETPREIKSTAYGSEGGNFSMQGKASGELQGVGKNINSDSSRPGSSSRVSFSTSRPSSNHNNRTQQGIGPQKVGPSMEWKPKAVNPVLAQGTGSDESVKIPAVPVEDHTSTLSASNNLDSQDTTRELEKKLEESHISDVHHVIIPDHLHVPEAEKLGFCFGSFDPSFGFNASSSNGPVSDVSSEASEVVDESIEEQPRNQNELASTDEGYQPDRPTSSSNMPESLSVDGDVSSNVAPEYQESKQETALPTAGHQYPVHTSPNFSFGFMPPMIGNQLSSFESNESQGRDGFHVPSLVVPQPFDPASYYAQFYHSGADGDGRMSPFHSTGPTKFNGNVPMLSSQEVGNSLMLSAAGPTPVTSQTGAVTQGSIAVTQQPLPVFRQPTGVHLSHYPPNFMPYGPYFSPYYVHPHPIHQFLNNGTFPQQPQGGSMYPVPPLASPKYPLPQYKPGGNAGNSGHIGMPGGYGPYGSTPAGYNPGSATTAGNSASNEDLGGSQFKESNAYMTGQQSEGPGVWYAAPGRDMFGLQANSFHNHSQGGQVAYGTQAGHGAFAGIYHPAQPVTTGAIHPHLQQSGTSVDMVGPAAGMYQQPQNAQMNWPNNY 846
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03328 846 PANTHER FLOCCULATION PROTEIN (DUF1296) 2 846 IPR044277 GO:0051082(PANTHER)
Aary13g03328 846 MobiDBLite consensus disorder prediction 193 227 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 444 500 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 42 176 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 256 324 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 118 166 - -
Aary13g03328 846 Pfam GBF-interacting protein 1 N-terminal 7 66 IPR009719 -
Aary13g03328 846 MobiDBLite consensus disorder prediction 52 73 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 259 317 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 419 500 - -
Aary13g03328 846 MobiDBLite consensus disorder prediction 193 208 - -
Aary13g03328 846 SUPERFAMILY UBA-like 7 69 IPR009060 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03328 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
6371 Aary13g03328 Aary15g02538
6372 Aary13g03328 Aary7g02519
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:174916338 Aary13g03328 Aary-Chr13:199983520 dispersed
Aary Aary-Chr13:199983520 Aary4g00863 Aary-Chr4:52816711 dispersed
Aary Aary-Chr5:186660001 Aary13g03328 Aary-Chr13:199983520 dispersed
Aary Aary-Chr5:205814301 Aary13g03328 Aary-Chr13:199983520 dispersed
Aary Aary-Chr13:199983520 Aary15g02538 Aary-Chr15:196482760 wgd
Aary Aary-Chr13:199983520 Aary7g02519 Aary-Chr7:213580362 wgd