AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03333 ATGGCTGAAGCTTATAAAATCTTCCAAACAACACTCATGCCATCACTCTCCCAAACACCATCCTTCCATAAACCATCTTTCCAAACACTCTCTTTACGTAGACCTTCACCACCAATCATAAGGTGCACTATTTCATCCACTAGTGACATATCCAAGGCTGCTGTGGGCTCGAAAGGGATACCGTGGGGTTGCGAGATTGATTCGGTCGAGAACGCGGCTGCGTTGGAGAAATGGTTGAGGGAATGTGGTTTGCCAGAGCAGAAAATGGATATAAAAAAGGTGGAAGTTGGTGAGAGAGGTTTGGTTGCGAATAATAATATTAGGAAGGGTGAGAAGTTGCTGTTTGTGCCTCCTTCTCTTGTTATTTCCGCGGATTCGGAGTGGAGTTTTCCAGAGGCTGGTGAAGTTTTGAAGAGATACGATGTACCCGATTGGCCATTGATTGCAACCTACCTAATTAGTGAGGCAAGTCTTATGAAGTCGTCTAGATGGAGCAACTATATATCCGCGTTGCCAAGACAACCTTACTCACTTCTATACTGGACACGTGGAGAATTAGATAGGTACTTGGAAGCTTCCCAGATTAGAGAACGAGCAATTGAAAGGATCAATAATGTAACGGGAACGTACAATGACTTGAGGGCAAGGATTTTTTCCAAGCATCCTAATCTGTTTCCTGAAGAGATATACAATATGGAAACGTTTAGATGGTCCTTCGGCATTCTCTTTTCACGCTTGGTTCGATTACCTTCGTTAGATGGAAGGGTTGCGTTGGTGCCATGGGCAGATATGTTAAATCATAGTTGTGATGTGGAAACCTTTTTGGATTATGATAAATCAACAAAGGGAGTTGTATTCACAACAGATCGCCCATACCAGCCAGGTGAGCAGGTTTTCATTTCATACGGAAGGAAATCTAATGGAGAACTACTGCTTTCTTACGGGTTTGTGCCAAGGCAAGGGACCAACCCACGTGACTCGGTTGAGTTGCCATTTTCACTTAAAAAATCAGATAAATGTTATGAACAAAAGGGGGAAGCTTTGAAGAAGCATGGATTGTCAGCATCACAATGTTTTCCGTTGCAAGTCACGGGTTGGCCATTGGAGCTGATGGCGTATGCATATTTAGCCGTGAGTCCACCGAGCATGAGTGGAAAATTTGAGGAGATGGCTGCTGCAGCATCAAATAAAAACACCAGTAATAAAGAGATCAGAATTCCTGAACTAGAGGAACAAGCATTTCAATATATCTTGGATAGCTGTGAATCGAGTATATCAAAGTACACCAAGTTTTTACAGGCAAGTGGGTCAATGGATTTGGATATAACATCTCCAAAGCAGCTCAACCGTAAAGTGTTCCTTAAACAGCTAGCCGTTGACTTGTGCAATAGTGAACAAAGAATCCTATTTCGCACCCAATATATACTGAGGAGGAAATTGAGGGATATGAGAAGAGGTGAACTGAAGGCCTTAAATTTGTTTGATAGTGTCTCAAAGTTCTTCAAATGA 1509 42.48 MAEAYKIFQTTLMPSLSQTPSFHKPSFQTLSLRRPSPPIIRCTISSTSDISKAAVGSKGIPWGCEIDSVENAAALEKWLRECGLPEQKMDIKKVEVGERGLVANNNIRKGEKLLFVPPSLVISADSEWSFPEAGEVLKRYDVPDWPLIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTRGELDRYLEASQIRERAIERINNVTGTYNDLRARIFSKHPNLFPEEIYNMETFRWSFGILFSRLVRLPSLDGRVALVPWADMLNHSCDVETFLDYDKSTKGVVFTTDRPYQPGEQVFISYGRKSNGELLLSYGFVPRQGTNPRDSVELPFSLKKSDKCYEQKGEALKKHGLSASQCFPLQVTGWPLELMAYAYLAVSPPSMSGKFEEMAAAASNKNTSNKEIRIPELEEQAFQYILDSCESSISKYTKFLQASGSMDLDITSPKQLNRKVFLKQLAVDLCNSEQRILFRTQYILRRKLRDMRRGELKALNLFDSVSKFFK 502
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03333 502 SMART set-7 87 309 IPR001214 GO:0005515(InterPro)
Aary13g03333 502 CDD SET-RBCMT 82 317 IPR044431 GO:0016279(InterPro)|GO:0018022(InterPro)
Aary13g03333 502 ProSiteProfiles SET domain profile. 87 303 IPR001214 GO:0005515(InterPro)
Aary13g03333 502 Gene3D - 321 491 IPR036464 -
Aary13g03333 502 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 73 477 IPR050600 GO:0016279(PANTHER)|GO:0018026(PANTHER)
Aary13g03333 502 Gene3D set domain protein methyltransferase, domain 1 69 317 - -
Aary13g03333 502 Pfam Rubisco LSMT substrate-binding 336 469 IPR015353 -
Aary13g03333 502 FunFam Ribulose-1,5 bisphosphate carboxylase-oxygenase large subunit N-methyltransferase, chloroplastic 56 316 - -
Aary13g03333 502 Pfam SET domain 99 303 IPR001214 GO:0005515(InterPro)
Aary13g03333 502 FunFam Rubisco methyltransferase family protein 322 485 - -
Aary13g03333 502 SUPERFAMILY SET domain 72 319 IPR046341 -
Aary13g03333 502 PIRSF RMT-SET 1 499 IPR011192 GO:0009507(InterPro)|GO:0030785(InterPro)
Aary13g03333 502 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 333 501 IPR036464 -
Aary13g03333 502 Coils Coil 196 216 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03333 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr10:211267150 Aary13g03333 Aary-Chr13:200173679 dispersed
Aary Aary-Chr13:200173679 Aary2g01165 Aary-Chr2:93187911 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aary SET 2e-16 No_clan TR SET