Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aary13g03333 | ATGGCTGAAGCTTATAAAATCTTCCAAACAACACTCATGCCATCACTCTCCCAAACACCATCCTTCCATAAACCATCTTTCCAAACACTCTCTTTACGTAGACCTTCACCACCAATCATAAGGTGCACTATTTCATCCACTAGTGACATATCCAAGGCTGCTGTGGGCTCGAAAGGGATACCGTGGGGTTGCGAGATTGATTCGGTCGAGAACGCGGCTGCGTTGGAGAAATGGTTGAGGGAATGTGGTTTGCCAGAGCAGAAAATGGATATAAAAAAGGTGGAAGTTGGTGAGAGAGGTTTGGTTGCGAATAATAATATTAGGAAGGGTGAGAAGTTGCTGTTTGTGCCTCCTTCTCTTGTTATTTCCGCGGATTCGGAGTGGAGTTTTCCAGAGGCTGGTGAAGTTTTGAAGAGATACGATGTACCCGATTGGCCATTGATTGCAACCTACCTAATTAGTGAGGCAAGTCTTATGAAGTCGTCTAGATGGAGCAACTATATATCCGCGTTGCCAAGACAACCTTACTCACTTCTATACTGGACACGTGGAGAATTAGATAGGTACTTGGAAGCTTCCCAGATTAGAGAACGAGCAATTGAAAGGATCAATAATGTAACGGGAACGTACAATGACTTGAGGGCAAGGATTTTTTCCAAGCATCCTAATCTGTTTCCTGAAGAGATATACAATATGGAAACGTTTAGATGGTCCTTCGGCATTCTCTTTTCACGCTTGGTTCGATTACCTTCGTTAGATGGAAGGGTTGCGTTGGTGCCATGGGCAGATATGTTAAATCATAGTTGTGATGTGGAAACCTTTTTGGATTATGATAAATCAACAAAGGGAGTTGTATTCACAACAGATCGCCCATACCAGCCAGGTGAGCAGGTTTTCATTTCATACGGAAGGAAATCTAATGGAGAACTACTGCTTTCTTACGGGTTTGTGCCAAGGCAAGGGACCAACCCACGTGACTCGGTTGAGTTGCCATTTTCACTTAAAAAATCAGATAAATGTTATGAACAAAAGGGGGAAGCTTTGAAGAAGCATGGATTGTCAGCATCACAATGTTTTCCGTTGCAAGTCACGGGTTGGCCATTGGAGCTGATGGCGTATGCATATTTAGCCGTGAGTCCACCGAGCATGAGTGGAAAATTTGAGGAGATGGCTGCTGCAGCATCAAATAAAAACACCAGTAATAAAGAGATCAGAATTCCTGAACTAGAGGAACAAGCATTTCAATATATCTTGGATAGCTGTGAATCGAGTATATCAAAGTACACCAAGTTTTTACAGGCAAGTGGGTCAATGGATTTGGATATAACATCTCCAAAGCAGCTCAACCGTAAAGTGTTCCTTAAACAGCTAGCCGTTGACTTGTGCAATAGTGAACAAAGAATCCTATTTCGCACCCAATATATACTGAGGAGGAAATTGAGGGATATGAGAAGAGGTGAACTGAAGGCCTTAAATTTGTTTGATAGTGTCTCAAAGTTCTTCAAATGA | 1509 | 42.48 | MAEAYKIFQTTLMPSLSQTPSFHKPSFQTLSLRRPSPPIIRCTISSTSDISKAAVGSKGIPWGCEIDSVENAAALEKWLRECGLPEQKMDIKKVEVGERGLVANNNIRKGEKLLFVPPSLVISADSEWSFPEAGEVLKRYDVPDWPLIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTRGELDRYLEASQIRERAIERINNVTGTYNDLRARIFSKHPNLFPEEIYNMETFRWSFGILFSRLVRLPSLDGRVALVPWADMLNHSCDVETFLDYDKSTKGVVFTTDRPYQPGEQVFISYGRKSNGELLLSYGFVPRQGTNPRDSVELPFSLKKSDKCYEQKGEALKKHGLSASQCFPLQVTGWPLELMAYAYLAVSPPSMSGKFEEMAAAASNKNTSNKEIRIPELEEQAFQYILDSCESSISKYTKFLQASGSMDLDITSPKQLNRKVFLKQLAVDLCNSEQRILFRTQYILRRKLRDMRRGELKALNLFDSVSKFFK | 502 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aary13g03333 | 502 | SMART | set-7 | 87 | 309 | IPR001214 | GO:0005515(InterPro) | |
| Aary13g03333 | 502 | CDD | SET-RBCMT | 82 | 317 | IPR044431 | GO:0016279(InterPro)|GO:0018022(InterPro) | |
| Aary13g03333 | 502 | ProSiteProfiles | SET domain profile. | 87 | 303 | IPR001214 | GO:0005515(InterPro) | |
| Aary13g03333 | 502 | Gene3D | - | 321 | 491 | IPR036464 | - | |
| Aary13g03333 | 502 | PANTHER | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE | 73 | 477 | IPR050600 | GO:0016279(PANTHER)|GO:0018026(PANTHER) | |
| Aary13g03333 | 502 | Gene3D | set domain protein methyltransferase, domain 1 | 69 | 317 | - | - | |
| Aary13g03333 | 502 | Pfam | Rubisco LSMT substrate-binding | 336 | 469 | IPR015353 | - | |
| Aary13g03333 | 502 | FunFam | Ribulose-1,5 bisphosphate carboxylase-oxygenase large subunit N-methyltransferase, chloroplastic | 56 | 316 | - | - | |
| Aary13g03333 | 502 | Pfam | SET domain | 99 | 303 | IPR001214 | GO:0005515(InterPro) | |
| Aary13g03333 | 502 | FunFam | Rubisco methyltransferase family protein | 322 | 485 | - | - | |
| Aary13g03333 | 502 | SUPERFAMILY | SET domain | 72 | 319 | IPR046341 | - | |
| Aary13g03333 | 502 | PIRSF | RMT-SET | 1 | 499 | IPR011192 | GO:0009507(InterPro)|GO:0030785(InterPro) | |
| Aary13g03333 | 502 | SUPERFAMILY | RuBisCo LSMT C-terminal, substrate-binding domain | 333 | 501 | IPR036464 | - | |
| Aary13g03333 | 502 | Coils | Coil | 196 | 216 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aary13g03333 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Aary | Aary-Chr10:211267150 | Aary13g03333 | Aary-Chr13:200173679 | dispersed | |
| Aary | Aary-Chr13:200173679 | Aary2g01165 | Aary-Chr2:93187911 | transposed |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Aary | SET | 2e-16 | No_clan | TR | SET |