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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03354 ATGGCGGCTGTTTCCAGTAGTATCACTGGTGGTGAAAGAAAGATTTTACAATCATTTGTTTGTGCAAGCCTAAGTTCTACCCATAGAAAACCTTGCCTTGGTAATTTAGCTTCTTCCGCTAGTGCTTCAAAAGGCTTACTGGATAAAATTAGACTTGCATTCCAAACTAGATCTGCAACAAGTATGGCAACAAACATGGAAAGTTCATCAAAGGTTCCAGAAAATGAAGTTGATCATGTTGATATGCTAAATGCTTCTTTTGATGGTCATGGAGGAGTTATTGTGAACGTTAAAGAGGACATGGATGAAAATGTCTTTATCGCTTTACTTCGAACATCAATATCTCAATGGCGGCAACAGGGAAAGACGGGTGTTTGGCTTAAACTTACTATTGAACTTGTGAATCTTGTTAAGCCTGCAGTCCAGGAAGGATTTTGGTACCATCATGCTGAATCAACGTATTTGATGCTCGTGTATTGGATTCCTGAGACTAATCATACCCTCCCACCAAATGCTTCACATCGAGTTGGTGTTGCTTCTTTTGTAGTCAACGATAAAGGGGAGCTTCTCGTAGTGCAAGAGAAAAGTGGAGTGTTCAAAGGCACAGGAGTCTGGAAGTTACCAACTGGTACTGTTGAGGAGGGTGAAGATATATCTGTAGCTGCAATCAGGGAAGTGAAAGAAGAGACTGATATTGATACAGAATTCATGGAGGTCCTAGCATTTAGGCAAAGCCACAAGTCATTTTTTAGCAAGTCCGATTTAATGTTTGTGTGTATGCTCAAACCAAAGTCTTCCGTTATTGAGAAACAAGATTCAGAAATTGAAGCAGCACAGGGTGAAGATATATCTGTAGCTGCAATTAGGGAAGTGAAAGAAGAAGCTGGTATTGACACTGAATTCTTGGAAGTCCTTGCATTCAGGCAAAGCCACAAGTCATTTTTTAGCAAGTCTGATTTAATGTTTGTGTGTATGCTAAAACCAAATCAATATGCGAACCAGCCCTTTGTAAAGAAGCACAAGTCATTCGACTACATTGCTAAAATATGCATGGCAAAAAAAGATAACAAATATGTTGGTTTTTCTGCATTGTCTACAGAGAATGCTACATCCGCCAAGAAGAGCTATTTGTATTCTGGTTATCAAGAGCTCTTGATTTCTATATTTAATATACACTAA 1179 38.93 MAAVSSSITGGERKILQSFVCASLSSTHRKPCLGNLASSASASKGLLDKIRLAFQTRSATSMATNMESSSKVPENEVDHVDMLNASFDGHGGVIVNVKEDMDENVFIALLRTSISQWRQQGKTGVWLKLTIELVNLVKPAVQEGFWYHHAESTYLMLVYWIPETNHTLPPNASHRVGVASFVVNDKGELLVVQEKSGVFKGTGVWKLPTGTVEEGEDISVAAIREVKEETDIDTEFMEVLAFRQSHKSFFSKSDLMFVCMLKPKSSVIEKQDSEIEAAQGEDISVAAIREVKEEAGIDTEFLEVLAFRQSHKSFFSKSDLMFVCMLKPNQYANQPFVKKHKSFDYIAKICMAKKDNKYVGFSALSTENATSAKKSYLYSGYQELLISIFNIH 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03354 392 FunFam nudix hydrolase 2 80 166 - -
Aary13g03354 392 Gene3D - 80 165 - -
Aary13g03354 392 ProSitePatterns Nudix box signature. 210 231 IPR020084 GO:0016787(InterPro)
Aary13g03354 392 Pfam NUDIX domain 279 334 IPR000086 -
Aary13g03354 392 Pfam NUDIX domain 174 278 IPR000086 -
Aary13g03354 392 Pfam Nudix hydrolase domain 83 161 IPR040618 -
Aary13g03354 392 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 175 277 - -
Aary13g03354 392 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 278 358 - -
Aary13g03354 392 PANTHER NUDIX HYDROLASE RELATED 55 279 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Aary13g03354 392 ProSiteProfiles Nudix hydrolase domain profile. 173 306 IPR000086 -
Aary13g03354 392 FunFam Nudix hydrolase 8 175 280 - -
Aary13g03354 392 SUPERFAMILY Nudix 279 327 IPR015797 -
Aary13g03354 392 SUPERFAMILY Nudix 142 277 IPR015797 -
Aary13g03354 392 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 133 151 IPR003293 -
Aary13g03354 392 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 171 189 IPR003293 -
Aary13g03354 392 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 259 283 IPR003293 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03354 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
Aary13g03354 K03574 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:201412068 Aary13g03357 Aary-Chr13:201561181 dispersed
Aary Aary-Chr13:201377627 Aary13g03354 Aary-Chr13:201412068 proximal