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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03370 ATGGCAGATTCAGACAACGAGGCAGGCGGGGAGTTATCAGCAAGGGAACAAGACAGGTTCCTGCCGATAGCAAACGTGAGCAGGATCATGAAGAAAGCGTTACCAGCAAATGCGAAGATATCGAAAGATGCCAAGGAGACGGTGCAGGAATGTGTGTCGGAGTTTATAAGTTTTATTACAGGTGAAGCTTCGGATAAGTGTCAAAGGGAGAAAAGGAAGACCATTAATGGTGATGATTTGCTTTGGGCTATGACTACTTTAGGCTTTGAGGAGTATGTTGACCCTTTGAAGGTGTATTTAGCAAAATACCGAGAAATGGAAGGCGAAAAGACTATCGGACGACAAGGCGAGAATGATGGGTCATCCGGAGGAGTTGGTGGTGCAAATCCTGGTGGGTATAATGATGGTGGTGGGATGTATGGAGGGATGCAGAATAGTATGGTGATGGGTAGGACACAACACCAAATGTATAACTCAAATTCGGGTTCGTATCAGCAAATGAGCTTGGGTAGTCCGAAAGGCGGTCTAGGCAGATCCGGCAGCTTTGGTGGCGGCTCTGGTGGAAGTTCGACCGTGAAGCCTAGGTAG 588 47.62 MADSDNEAGGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKVYLAKYREMEGEKTIGRQGENDGSSGGVGGANPGGYNDGGGMYGGMQNSMVMGRTQHQMYNSNSGSYQQMSLGSPKGGLGRSGSFGGGSGGSSTVKPR 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03370 195 ProSitePatterns NF-YB-HAP3 subunit signature. 51 67 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Aary13g03370 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 155 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Aary13g03370 195 SUPERFAMILY Histone-fold 17 117 IPR009072 GO:0046982(InterPro)
Aary13g03370 195 MobiDBLite consensus disorder prediction 146 172 - -
Aary13g03370 195 MobiDBLite consensus disorder prediction 111 130 - -
Aary13g03370 195 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Aary13g03370 195 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Aary13g03370 195 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Aary13g03370 195 MobiDBLite consensus disorder prediction 136 195 - -
Aary13g03370 195 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 20 84 IPR003958 -
Aary13g03370 195 Gene3D Histone, subunit A 10 129 IPR009072 GO:0046982(InterPro)
Aary13g03370 195 FunFam Nuclear transcription factor Y subunit B-3 9 129 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03370 K08065 nuclear transcription Y subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:201596482 Aary13g03370 Aary-Chr13:201951093 dispersed
Aary Aary-Chr13:201951093 Aary2g01747 Aary-Chr2:127711708 dispersed
Aary Aary-Chr10:288014352 Aary13g03370 Aary-Chr13:201951093 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aary1g03017 ACH,AST 8 156 CCAAT-HAP3 Transcription Factor family AT2G37060 77.852 8.12e-82 237.0
Aary1g03431 . 1 150 CCAAT-HAP3 Transcription Factor family AT5G47670 67.55 1.82e-68 207.0
Aary2g01747 ACH,AST 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 86.29 1.13e-74 221.0
Aary5g03233 AST 1 194 CCAAT-HAP3 Transcription Factor family AT5G47670 59.898 2.73e-73 220.0
Aary5g03297 . 1 194 CCAAT-HAP3 Transcription Factor family AT5G47670 58.883 3.13e-68 207.0
Aary6g00957 ACH,AST 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 77.095 1.57e-89 257.0
Aary8g00893 ACH,AST 8 170 CCAAT-HAP3 Transcription Factor family AT2G37060 68.862 3.26e-77 228.0
Aary8g01669 . 45 157 CCAAT-HAP3 Transcription Factor family AT2G47810 67.521 1.20e-55 169.0
Aary8g01673 AST 51 157 CCAAT-HAP3 Transcription Factor family AT2G47810 69.369 4.55e-55 168.0
Aary9g02111 . 1 97 CCAAT-HAP3 Transcription Factor family AT1G09030 73.469 1.40e-51 158.0
Aary10g02907 ACH,AST 8 173 CCAAT-HAP3 Transcription Factor family AT2G37060 69.714 7.28e-82 238.0
Aary10g03450 . 16 108 CCAAT-HAP3 Transcription Factor family AT4G14540 80.645 6.18e-53 164.0
Aary10g03452 . 8 108 CCAAT-HAP3 Transcription Factor family AT4G14540 75.248 9.67e-53 164.0
Aary10g04036 ACH 1 168 CCAAT-HAP3 Transcription Factor family AT2G37060 71.591 9.54e-80 233.0
Aary10g05240 ACH,AST 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 86.29 1.28e-74 221.0
Aary13g00891 . 1 169 CCAAT-HAP3 Transcription Factor family AT5G47670 65.497 2.12e-69 209.0
Aary13g03359 ACH 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 84.127 4.72e-73 216.0
Aary13g03370 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 84.127 5.04e-73 216.0
Aary13g03690 AST 1 194 CCAAT-HAP3 Transcription Factor family AT5G47670 59.898 6.95e-72 216.0
Aary14g01092 ACH,AST 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 77.095 1.57e-89 257.0
Aary16g00912 ACH,AST 1 170 CCAAT-HAP3 Transcription Factor family AT2G37060 68.391 9.03e-79 230.0
Aary16g01684 AST 51 157 CCAAT-HAP3 Transcription Factor family AT2G47810 69.369 4.55e-55 168.0
Aary17g02130 ACH 1 97 CCAAT-HAP3 Transcription Factor family AT1G09030 73.469 2.10e-51 157.0
Aary17g02666 . 8 108 CCAAT-HAP3 Transcription Factor family AT4G14540 71.287 1.08e-43 150.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aary CBFD_NFYB_HMF 1.8e-27 CL0012 TF NF-YB