AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03378 ATGGCTACACAATTGAATCCATCATCTTCCACCACCACCTTAATCTCACCTTCTTCATTCAACCAACAATCTGTTAAAAACATTTCAACAAAATCAAGATTGGTTTTCAAGATTCAGTCAAATTTCAACCAAAAAAAACAGTTTGAACTTAAGTCCTCAAATGGGTCTCCTCTTAATGCTGTTTCTTTGCATGATGTCGGTTCAAATATGAATGAATCAGTTCTATCTTCTATCAAACCGCTGAGACGATTGTTCTTGATTTCGTGTTATCATTGTCTGCTGGCTTTTCGAGTAGGTGCAGCAGAAAAGCCTCTAGCAAAAGAAACTGTAGTATTACCGGAACAAACTGAAACAAATCTTAGTGTGACGGTTGTGGGCGCCTCAGGCGATCTTGCTAAGAAGAAGATTTTCCCTGCCCTTTTTGCTCTCTTTTATGAGGGCTGTTTACCACAGAATTTTACTATATTTGGTTATGCTCGAACCAAAATGACCGATGAGGAGCTCAGGGAAATGATTAGTAGAACATTAACTTGCAGAATTGATAAGAGGGAAAATTGTGGTGACAAAATGGAAGAGTTTCTTGAAAGATGCTTTTACCATTCGGGTCAATACGGATCTGAGGAAAATTTTGCAGAATTAGACACTAAGCTAAAACAGAAAGAGGGTGGAAAACTGTCGAATAGGTTGTTTTACTTGTCAATACCTCCAGACATTTTTGTGGATGTGGTACGTTGTGCGAGTGAAAGAGCTTCTTCTAAAACTGGGTGGACACGGGTGATAGTCGAGAAACCATTTGGGCGTGACTCGGAATCGTCTGGAGAGCTAACAAGAAGCCTGAAGAAGTACTTAGCTGAGGAACAAATCTTTAGAATTGATCATTATTTGGGAAAGGAGCTTGTGGAGAATCTATCAGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCAAGAAACTACATTCGCAGTGTACAATTCATATTTTCAGAAGACTTTGGTACAGAAGGACGAGGAGGTTACTTTAACAACTACGGAATCATTCGCGATATAATGCAAAACCACCTTCTGCAAATATTAGCATTGTTTGCAATGGAAACACCCGTTAGTTTAGACGCCGAGGACATTAGAAATGAAAAGGTCAAAGTTTTGAGGTCAATGAGACAACTTAAACTCGAAGATGTAGTTGTCGGTCAATATAAGGGTCATAGCAAGGGGGGAAAGACGTTTTTAGGATACACAGAGGACCCGACTGTCCCAAACGATAGCATCACTCCAACTTTTGCAGCAGCAGCACTCTTTATTGATAATGCTCGCTGGGATGGTGTTCCTTTCCTCATGAAAGCTGGAAAGGCCCTGAATACTAGACGGGCGGAGATCAGAGTTCAGTTCAGACATGTTCCTGGCAACCTGTATAAACGAAACTTTGGGACAGATATGGACAAAGCTACAAATGAACTTGTGCTTCGTGTGCAGCCCAATGAAGCCATCTTTCTTAAAATCAATAACAAGATCCCTGGTCTTGGTATGAGGCTCGACAGAAGTGACCTTAATTTGCTCTACAGTATGAGATATCCAAAGGAAATACCGGATGCATACGAGAGGCTTTTATTGGACGCAATAGAAGGAGAAAGGAGATTGTTTATAAGAAGTGATGAGCTTGATGCTGCGTGGTCTATATTTACCCCATTGTTGAAAGAACTTGAGTCTAACAAGATTGCCCCAGAGTTATATCCGTATGGTAGTAGAGGACCAGTTGGAGCTCATTATCTGGCTGCAAAATACAATGCCCGGTGGGGCGATCTTGCGGGAGATGACTAA 1821 40.91 MATQLNPSSSTTTLISPSSFNQQSVKNISTKSRLVFKIQSNFNQKKQFELKSSNGSPLNAVSLHDVGSNMNESVLSSIKPLRRLFLISCYHCLLAFRVGAAEKPLAKETVVLPEQTETNLSVTVVGASGDLAKKKIFPALFALFYEGCLPQNFTIFGYARTKMTDEELREMISRTLTCRIDKRENCGDKMEEFLERCFYHSGQYGSEENFAELDTKLKQKEGGKLSNRLFYLSIPPDIFVDVVRCASERASSKTGWTRVIVEKPFGRDSESSGELTRSLKKYLAEEQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRSVQFIFSEDFGTEGRGGYFNNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRQLKLEDVVVGQYKGHSKGGKTFLGYTEDPTVPNDSITPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGTDMDKATNELVLRVQPNEAIFLKINNKIPGLGMRLDRSDLNLLYSMRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELESNKIAPELYPYGSRGPVGAHYLAAKYNARWGDLAGDD 606
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03378 606 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 124 302 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 119 601 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 FunFam Glucose-6-phosphate 1-dehydrogenase 291 600 - -
Aary13g03378 606 FunFam Glucose-6-phosphate 1-dehydrogenase 116 290 - -
Aary13g03378 606 NCBIfam glucose-6-phosphate dehydrogenase 121 600 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 PRINTS Glucose-6-phosphate dehydrogenase signature 258 271 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 PRINTS Glucose-6-phosphate dehydrogenase signature 334 351 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 PRINTS Glucose-6-phosphate dehydrogenase signature 439 465 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 PRINTS Glucose-6-phosphate dehydrogenase signature 352 368 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 PRINTS Glucose-6-phosphate dehydrogenase signature 282 310 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 114 305 IPR036291 -
Aary13g03378 606 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 116 598 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 Coils Coil 373 393 - -
Aary13g03378 606 Gene3D Dihydrodipicolinate Reductase; domain 2 291 600 - -
Aary13g03378 606 Gene3D - 116 290 - -
Aary13g03378 606 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 292 599 - -
Aary13g03378 606 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 305 599 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Aary13g03378 606 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 292 298 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03378 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr11:103696933 Aary13g03378 Aary-Chr13:202212869 dispersed
Aary Aary-Chr13:201791867 Aary13g03378 Aary-Chr13:202212869 dispersed
Aary Aary-Chr13:202212869 Aary15g02227 Aary-Chr15:172471732 dispersed
Aary Aary-Chr13:202212869 Aary4g03141 Aary-Chr4:207085134 transposed
Aary Aary-Chr13:202212869 Aary12g03481 Aary-Chr12:231864074 transposed