AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03384 ATGAACTCAACACTTCTCAAAACAACAACAACACCATTCATCAATCACCACCCTCTTCCCAAAACAAGATTCTCAAAACAATTCCAATACAAAAACTCAACATATTTTCAAACCATTTTCCCAATCAAGTTTTCAAGAAAACTCCATTTTTGCAACATTAAAGCTTATAAAAAAAACCCATTACATATTAGTACCCAAATTGAAGAACCCATCAAGGGTTTTTCAAAAAGATATGATCTTGATAAGATTAAGGGTGTGATTAGATTTGGGTTAGTGATGGGTGTGTTGGTTTTAGGTGTGATTAGGTGTCAAAATGTTATGGCAATGGAGGGTGGGAGTGGTTTAGGGGGTATGGTTAATGTGAAGGGTTTTTGGAATGGGCCTAAGTTTTCGCAGGTTTTACGGGTTTTTAGAGAGCAAGGTTTGATTTTGGCTGGGCTTTTGGGGTTGTCTGCCTTCTTCTCTATGGCTGAGACTTCGATTACTACTCTTTCGCCTTGGAAGGTGAGAGAGCTGGCTGAAAAAGAAGGAGAAAATGGCGTCTTTAAGCTGCTTCGTACAGATGTAACCCGCTTCCTTACCACCATCCTAATTGGGACAACTGTGGTCAACATTGGAGCTACGGCACTTTTCACAGAAGCGGCAACAACGGTTTTTGGTGAAGCTGGTGTCAGTGCAGCAACAGGTGTTATGACGGTTGTTGTTTTACTTTTGACTGAAATTACTCCCAAAAGTATAGCTGTTCACAACGCTACTGCAGTTGCTAGGGCTGTGGTACGTCCCGTTGCATGGCTTTCAATTGTTCTATATCCAGTTGGAAGAGTTGTTACCTTCCTTTCAATGGGAATGCTTAAAATTCTTGGCTTGAAAGCGAAAAGTGCACCATCTGTCACTGAAGATGAACTCAAGTTGATGTTGAGGGTTGCCGAGTTGAGTGGGGCCATTGAGGAAGAAGAACAGGATATGATCGAGAATGTGTTGGAGATAAAAGACACCCACGTGAAGGAGGTTATGACCCCTCTTGTAGATGTAGTCGCAGTTGATGCTGGTGCAACAATACTCGATTTCCATCACTTGTGGGTGACTCATCAATATTCTAGGGTGCCGGTATTTGAGCAGAGAATTGATAACATTGTTGGCATAGCTTATGCAATGGATTTGTTGGATCTTGTCAAGAAAGGAGAGATGCTAGAAACTGCAGTGGTGGGTGAAATCGCTCACAAACCTGCCTATTTTGTTCCTGATTCAATGTTAGTCTGGAATCTTCTGAGGGAGTTTCGCATCAGGAAGGTCCACATGGCGGTAGTTCTTAATGAATATGGAGGAACCGTGGGTATTGTAACACTCGAGGATGTTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAACGATTCAAAGGAAGAAATTGAGCGAAAAACCGGGAATATTGTAAAGCGAGCGGATGGAGTCTTTGATGTTGATGCAAATACATCAATATACCAACTTTCTGAAGATCTTGAAATCATTTTGCCAGAGGATCATCAATACGAGACAGTGTCAGGTTTCATTTGCGAAGCATTTGGATATATACCTAGAACAAGTGAAAGTATTAAAGTAGTACTAAAAAAAGCAAATAAAGAAGATGATGATGATAATGACGAGAATAAACAAGAAACCAACAGTCAAGATCAGAAAGATACATCTCAAACATTCAAACTCGGGATTTTGGCGGGAAATTGTAGAAAGGTTAATACTGTTAGATTCGAAAGGATAAACAACAATTCAGCTAAAGAAATTAAAGAAGCTGCTAGGATCGTGCCCAGATTTTGGAAAACGAAATGGAAAAGTGACGAAAGCTCAGCCAGCAGCGATGAAGAAAGATTGTATCAGGACCCACCCAGAACCGCCATTTCCCATGCCCATATTTTGGCAGAAAATAACAAACAATGA 1932 40.53 MNSTLLKTTTTPFINHHPLPKTRFSKQFQYKNSTYFQTIFPIKFSRKLHFCNIKAYKKNPLHISTQIEEPIKGFSKRYDLDKIKGVIRFGLVMGVLVLGVIRCQNVMAMEGGSGLGGMVNVKGFWNGPKFSQVLRVFREQGLILAGLLGLSAFFSMAETSITTLSPWKVRELAEKEGENGVFKLLRTDVTRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVSAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSIVLYPVGRVVTFLSMGMLKILGLKAKSAPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVDVVAVDAGATILDFHHLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDLVKKGEMLETAVVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIERKTGNIVKRADGVFDVDANTSIYQLSEDLEIILPEDHQYETVSGFICEAFGYIPRTSESIKVVLKKANKEDDDDNDENKQETNSQDQKDTSQTFKLGILAGNCRKVNTVRFERINNNSAKEIKEAARIVPRFWKTKWKSDESSASSDEERLYQDPPRTAISHAHILAENNKQ 643
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03384 643 Gene3D - 313 468 IPR046342 -
Aary13g03384 643 ProSiteProfiles CNNM transmembrane domain profile. 133 319 IPR002550 -
Aary13g03384 643 SUPERFAMILY FAD-binding-transporter-associated domain-like 476 539 IPR036318 GO:0050660(InterPro)
Aary13g03384 643 ProSiteProfiles CBS domain profile. 406 463 IPR000644 -
Aary13g03384 643 MobiDBLite consensus disorder prediction 608 630 - -
Aary13g03384 643 Pfam CBS domain 402 457 IPR000644 -
Aary13g03384 643 Pfam CBS domain 334 391 IPR000644 -
Aary13g03384 643 Pfam Cyclin M transmembrane N-terminal domain 143 319 IPR002550 -
Aary13g03384 643 Pfam Transporter associated domain 479 581 IPR005170 -
Aary13g03384 643 MobiDBLite consensus disorder prediction 539 562 - -
Aary13g03384 643 ProSiteProfiles CBS domain profile. 338 399 IPR000644 -
Aary13g03384 643 FunFam Magnesium-cobalt efflux protein CorC 315 465 - -
Aary13g03384 643 SMART cbs-1 343 392 IPR000644 -
Aary13g03384 643 SMART cbs-1 409 457 IPR000644 -
Aary13g03384 643 MobiDBLite consensus disorder prediction 608 626 - -
Aary13g03384 643 PANTHER HEMOLYSIN-RELATED 117 613 - -
Aary13g03384 643 CDD CBS-pair-CorC-HlyC-assoc 333 454 IPR044751 -
Aary13g03384 643 Gene3D - 473 567 IPR016169 -
Aary13g03384 643 SMART CorC-HlyC-2 478 586 IPR005170 -
Aary13g03384 643 SUPERFAMILY CBS-domain pair 321 460 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03384 K03699 magnesium and cobalt exporter, CNNM family
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:177304990 Aary13g03384 Aary-Chr13:202421118 dispersed
Aary Aary-Chr13:202421118 Aary5g02554 Aary-Chr5:146898546 transposed