AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03432 ATGGACGTACTATTCAAATCAATAAACGTCCGTGACCTCCTCCCCTCCCACGACCTCGACGACACGTCACCCCTCTCCGCCCCAGACCTCCGTCTCCTAATCGACCGTCTCAACCTCCACTCCCTCCACATCAAATCCAAAGTCCAAAACTACGTCGTTTCACACAACCAAGACTTCCTAACCCTCTTTCAACAATCCTCAGATTCCGTTACCAATTCACAACACCTCTCCGAAAAAGTCGCTGATCTTGTTGACCGGTTAGATCATAATGAGATTGAGAATGTTGAGAGGATTGTGGATGAGATTAGGGTTAGGAGAGGTGAGATGAAGGAGAAGAAGGAGGTGATGGAGTTGGTTGATGTGGTGGTGAAGATGAATCAGGTTTTGACTGGGATTGAGTCTGATTTGGGGAGTGGGAGGTTTGTTGAGGCGGCTGAGGCGGTTACGGAGATGAAATCGGCGTTGCGTGTGAGTGATGGTGCGGGGGAGGTTAGGGAGCCGGTCGTGTTTGGTTTGTTGAGGAAGAAATGGACCGATTGTTTTGAAAAGATACAAGAGGTGTTAGTGAAGTTTATTGAGAATGCGGTGAGATTTGATCAGCAGTCTAATGCGGTTTATGTGAAGAATAAGATGGATGTGAATGATGTTAAAGGTGCTGAGTTATGTACTGTTTTGAAAGCAATGGATGTAGTTGGTATTCTAGATTATGGACTTGCTAAAGTAGCGGACTTAATGATGAAACATGTGATAGCTCCTGCAGTGCGATCTGGTTCCCGTAGTTTTGCTGTAGAAGAGCAAAGATCAGATTCAGGGTGTATAGCTGATGTAGCTTTGAGGATAACACCGCCTTCTGGTACCCAGATTGAGAAAATTGATGCTGAAACTATTTATTCTGGAATAAAAGTGATTGTTCAATTTATCTTCAACTATATTTGCTTTCAAAATTCTTCCTGGATGCAACTATTTGGAAGATTGACATGGCCGCAGATGGCGGAATTGATTATTTCAAACTTTCTCTCCAAGATCGTTCCGAATGATGCTTCCAAACTTGCTGACTTCCAAACGATAAGACAACTTACTTCTGAGTTTGAGACATCTCTTAAAGAAGTTATGTTCATTTCCTCTGGCAAAGATGAAAGGTTGACCAATTTTGCTGACAATGTTGAAGTTCACTTTGCAACGAGGAAGAAGGTTGAGATTTTAGCAACAGCTAGAGATCTTCTTCTACATTCAGATTTTAAGCTCCCCAAGGATTATTCAAGAAAAAGTGGTGTCTCTAAAAATAGTGGGAATGTGGACTTGCTTTTCTCGTCTGAAAGGTGTGTCATATCCGAAGCAGCTGCTCAACTAATGGAAGTTGTGCATCAAACACTGAAGGATGTTTGCTTGTCATCTGCAACAGTGGCTTTAGAATTCTATCATGCTGCTAGGGATGCTTTACTTCTGTATGAAACTGTTATTCCTGTCAAGCTAGAAAGACAGCTGGATGGTATCAACCAGGTTGCAGTTTTAATTCATAATGATTGCCTATTTCTATCACAGGAGATTCTTGGCCTTATATTTGAGTATCAGTCAGACTTCCCAGCTTCCATGAAGGGAGCTGTATTTATTGATTTGGGTGTAAGATACAAGTTGATGGCAGAAGAGATATTACAAAGACAAATACAGCTTGTTAAGCATAATCTGATGGAGGCCATAGATGGTGCCGATGGATTTCAGAATACCCATCAACCAAAGCGATATGAATCTGCAAAGTTCAGCATTGATCAGGTAGCTTTCATCCTTGAGAAAGTGCACATAATATGGGAGCCACTGCTACTACCCTTGACGTATAAAGGAAGCATGTGCACGGTCTTGGAGGCTGTATGCTCCAGAATGACCAAAGACATACTTCTTCTTGATGACATTGCAGCAGAAGAAACATTACAGATCCAAAGACTAATTCACATGCTGCTAGAAAACCTTTCTTCTTTATTGGAATCTTTGGTTGCTATTAATGACACAACGAAACCACAAAAGGCATTGTCAGGCTCTATTGATGACCTCATACCATCACTCCCACGACTACGCATACTTGCAGATATGCTGGACATGCCTCTGAAATCCATTACTGCATCTTGGGAAAGTGGGGAGCTGGCGAAACACGGTTATACTTCATTAGAGGTGAGTGACTTTATTAGAGCAATATTTACAGATTCGCCCCTAAGGAAAGAATGTTTGTGGATAATCGAAAATATCAGTTTTTAG 2247 41.92 MDVLFKSINVRDLLPSHDLDDTSPLSAPDLRLLIDRLNLHSLHIKSKVQNYVVSHNQDFLTLFQQSSDSVTNSQHLSEKVADLVDRLDHNEIENVERIVDEIRVRRGEMKEKKEVMELVDVVVKMNQVLTGIESDLGSGRFVEAAEAVTEMKSALRVSDGAGEVREPVVFGLLRKKWTDCFEKIQEVLVKFIENAVRFDQQSNAVYVKNKMDVNDVKGAELCTVLKAMDVVGILDYGLAKVADLMMKHVIAPAVRSGSRSFAVEEQRSDSGCIADVALRITPPSGTQIEKIDAETIYSGIKVIVQFIFNYICFQNSSWMQLFGRLTWPQMAELIISNFLSKIVPNDASKLADFQTIRQLTSEFETSLKEVMFISSGKDERLTNFADNVEVHFATRKKVEILATARDLLLHSDFKLPKDYSRKSGVSKNSGNVDLLFSSERCVISEAAAQLMEVVHQTLKDVCLSSATVALEFYHAARDALLLYETVIPVKLERQLDGINQVAVLIHNDCLFLSQEILGLIFEYQSDFPASMKGAVFIDLGVRYKLMAEEILQRQIQLVKHNLMEAIDGADGFQNTHQPKRYESAKFSIDQVAFILEKVHIIWEPLLLPLTYKGSMCTVLEAVCSRMTKDILLLDDIAAEETLQIQRLIHMLLENLSSLLESLVAINDTTKPQKALSGSIDDLIPSLPRLRILADMLDMPLKSITASWESGELAKHGYTSLEVSDFIRAIFTDSPLRKECLWIIENISF 748
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03432 748 Coils Coil 92 112 - -
Aary13g03432 748 Pfam Centromere-kinetochore protein zw10, middle domain 173 408 IPR048344 -
Aary13g03432 748 Pfam Centromere-kinetochore protein zw10, C-terminal 436 564 IPR048343 -
Aary13g03432 748 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 4 745 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Aary13g03432 748 Pfam Centromere-kinetochore Zw10 N-terminal 39 127 IPR009361 GO:0000278(InterPro)|GO:0000775(InterPro)|GO:0005634(InterPro)
Aary13g03432 748 Pfam ZW10 C-terminal helical domain 587 742 - -
Aary13g03432 748 Gene3D - 541 747 IPR046362 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03432 K11578 protein transport protein DSL1/ZW10
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Event-related genes

Select Gene_1 Gene_2 Event_name
168199 Aary5g02886 Aary13g03432
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:206140531 Aary5g02886 Aary-Chr5:176088498 wgd