AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03452 ATGATTAAGCAATTTCTTAAAAAGATTCCCAAGAAATCATCCTCAAAATCATCACACCATAATGATGATCAAAAACCCGATTCTAGCTCGAATAAGGCGAATATTTCTAGTGTTAAGTCTAGTGAAGTGGTGCAGATAGTTAATGAAGCTTCTTATGAAGCATTGCCTAGTTTTCGAGACGTATCAAGTTCCGAAAAACATAGTTTGTTCATTAAGAAAATGGATATGTGTTGTGTAGTGTTTGATTTTAACGACCCGTTAAAGAGTTCAAAAGAAAAAGATGTAAAGAAACAAACTTTACTTGAACTAGTTGAATATGTTTCTTCAGTAAGTTCCAAGTTTAATGAGGTTACAATATTGGAGATAACGAAAATGGTGTCTGTTAATTTGTTTCGGTCATTACCTAACTTAAGTAATGAAAGTAAGCTGCCGGATATATATGATCAAGAAGATGACGAGTTTGTTATGGATCCTTCATGGCCACATCTTCAAGTTGTGTACGAGTTTTTGCTTAGGTTTGTGGCCTCATCAGAGACTGATGCTAAAATTGCGAAAAAGTATATAGATCAGTCTTTCGTGTTAAAATTGCTTGATCTTTTTGATTCTGAGGATCAAAGGGAAAGGGAATATTTAAAGACGATTATGCATAGGATTTATGGCAAGTTTATGGTGCATCGGCCGTTTATTAGAAAAGCGATTAATAACATATTTTATCATTTTATTCTTGAGGCTGGTAAGCATAATGGGATAGCGGAAATACTTGAGCTTTTAGGTAGTATAATTAATGGATTTACGATGCCATTGAAGGAAGAACATAAGGTGTTTCTTGTTCGTGTGTTGATTCCGCTTCATAAGCCGAGGTATTTGTCTATGTATCAGCAGCAGCTTGTGTATTGTGTTAGTCAGTTTGTTGAAAAAGATAGTAAGTTAGCTGATACAGTGATTAGGGGGCTGTTAAAGTATTGGCCTGTGACTAATAGTGCTAAAGAAGTGATGTATCTTAGCGAATTGGAGGAAATTCTTGAAGTTACTAAGGCTGCAGAATTTGAAAAGTGTATGGTTCCTTTGTTTCGTCAGATTGGTCATTGCCTCAATAGTCCACATTTTCAGGTAGCAGAACGTGCGTTATTCCTATGGAATAACGAGCATATAAGGAATCTAATAATTAAAAACCGCAAGGTGATTCTGCCCCTCATCTTCTCCCCTTTGGAGAAAAACACAAAAGCTCATTGGAATCAAGCCGTTCAAACCCTAACCGTAAATGTCAGGAAAGTATTCTCAGATTTTGATCAATCATTATTCCAGGATTGTCTAGTCAGCTACCAAGAACACGAAAACAAGGTAAAGGAAAGCCTTGCAAAGCGACAGATGACTTGGAACCGCCTTGATGCCTTAGCAGCCTCCCAAACCAAGCCTATAGTCATCTCGATGTTTAACTCACCTGTGACTATGACGACCACCACTGCAGTAAAATAA 1476 36.86 MIKQFLKKIPKKSSSKSSHHNDDQKPDSSSNKANISSVKSSEVVQIVNEASYEALPSFRDVSSSEKHSLFIKKMDMCCVVFDFNDPLKSSKEKDVKKQTLLELVEYVSSVSSKFNEVTILEITKMVSVNLFRSLPNLSNESKLPDIYDQEDDEFVMDPSWPHLQVVYEFLLRFVASSETDAKIAKKYIDQSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYHFILEAGKHNGIAEILELLGSIINGFTMPLKEEHKVFLVRVLIPLHKPRYLSMYQQQLVYCVSQFVEKDSKLADTVIRGLLKYWPVTNSAKEVMYLSELEEILEVTKAAEFEKCMVPLFRQIGHCLNSPHFQVAERALFLWNNEHIRNLIIKNRKVILPLIFSPLEKNTKAHWNQAVQTLTVNVRKVFSDFDQSLFQDCLVSYQEHENKVKESLAKRQMTWNRLDALAASQTKPIVISMFNSPVTMTTTTAVK 491
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03452 491 MobiDBLite consensus disorder prediction 1 37 - -
Aary13g03452 491 SUPERFAMILY ARM repeat 68 447 IPR016024 -
Aary13g03452 491 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 3 470 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Aary13g03452 491 Gene3D - 63 464 IPR011989 -
Aary13g03452 491 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 62 465 - -
Aary13g03452 491 PIRSF PP2A-B56 3 490 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Aary13g03452 491 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 55 466 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03452 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:207276900 Aary17g01026 Aary-Chr17:87256362 dispersed
Aary Aary-Chr13:207276900 Aary17g02444 Aary-Chr17:146542507 wgd
Aary Aary-Chr13:207276900 Aary5g02905 Aary-Chr5:177034608 wgd
Aary Aary-Chr13:207276900 Aary9g02570 Aary-Chr9:155567040 wgd