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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03465 ATGGCAATAAACAGGGTTGGATCATCAGGAGCATGTAATCCAGCAATAGTAAAGATGTTAATAACATTTATAGGAATAAGTATGGTTGGTTATTTAATAGGTCCACCTTTATATTGGCATCTTCTTGAAGCCCTTCATCGCTCTTCTGTTGCTGCTGTTTCTTGCCCTGTTTGCAACTGTGATTGTGATTCTCAACCTCTCCTCTCCATTCCTCAAGCGCTAAGCAACGGTTCCTTCACAGATTGTGCAAAGCATGATCCTGAAGTGAGTGGAGACACAGAAAAGAATTTCGTCGAGCTTCTCTCTGAAGAATTAAAGCTACGTGAAGCTGAAGCTCTAGAAAGTCAACAACGTGCTGACATGGCACTTCTCGAGGCCAAGAAGTTAACATCCCAATATCAAAAAGAAGCAGACAAGTGTAATTCAGGAATGGAAACTTGTGAAGAAGCTCGTGAAAAAGCCGAAGCAGCTTTACTAGCACAAAAACAACAAAGTGAAATGTGGGAATTAAGAGCCAAACAAAGAGGTTGGAAAGAAGGCAGTACTAAGTCTGTACACACTGCTTGA 567 41.27 MAINRVGSSGACNPAIVKMLITFIGISMVGYLIGPPLYWHLLEALHRSSVAAVSCPVCNCDCDSQPLLSIPQALSNGSFTDCAKHDPEVSGDTEKNFVELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALLAQKQQSEMWELRAKQRGWKEGSTKSVHTA 188
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03465 188 Coils Coil 107 127 - -
Aary13g03465 188 PANTHER EXPRESSED PROTEIN 12 185 - -
Aary13g03465 188 Pfam Protein of unknown function (DUF1068) 15 180 IPR010471 -
Aary13g03465 188 Coils Coil 144 164 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03465 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
6406 Aary13g03465 Aary17g02439
6407 Aary13g03465 Aary9g02565
168217 Aary5g02918 Aary13g03465
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:207944109 Aary2g02581 Aary-Chr2:160380474 dispersed
Aary Aary-Chr13:207944109 Aary17g02439 Aary-Chr17:146378937 wgd
Aary Aary-Chr13:207944109 Aary5g02918 Aary-Chr5:177875503 wgd
Aary Aary-Chr13:207944109 Aary9g02565 Aary-Chr9:155355138 wgd