AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03486 ATGCATATAAGCGGTCACCACTCCTCCACGCTCCTCCGACGCGCCGCCCGATCCTCATCATCCACCAGGCTCCAGTCATCTCTCTCATCTAAATCACCGTCGCCGTCGTCAGCACCGTCACGATCTTACACCACCGCCGCATCTACAACATCGCGATGGAGTCACGGTGTGAATTGGAGGTCGCCGGCCTCGTTGACTTCTCAGATCAGGATTGCGTCTGTTGCGTCTCCTGTGCTTGATCGATTTCATCGTTCTCTTGCTACTAGAGCCTCCGAGAATGCTTTCAGTGGGATTTTGACTGGTCTCCCTAAACCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGCTTGCCTGCTCTGAATGACCCGAGAGTCGACAAGCTGCCATATTCAATTAGGATACTTCTCGAATCAGCGATCCGTAATTGTGACAATTTCCAAGTCACCAAGGAAGATGTCGAGAAAATCATTGACTGGGAGAAGAGTGCTCCAAAGCAGGTTGAAATTCCGTTCAAGCCTGCTCGTGTTCTGTTACAGGATTTTACTGGTGTGCCAGTTGTGGTAGACCTGGCAGGTATGCGTGATGCTATGAACAATCTTGGTGGGGACTCCCAGAAAATTAATCCTTTGGTTCCTGTGGATCTTGTGGTCGATCATTCAGTTCAAGTTGATGTTGCTAGGACTGAAAATGCAGTAAAAGCAAACATGGAGCTTGAATTTCAGAGAAACCAGGAGAGATTTGCTTTTCTTAAGTGGGGATCTAAAGCTTTCCAAAATATGCTTGTGGTTCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGAAGAGTTGTTTTCAACACTGAGGGCATTCTCTACCCTGATAGTGTTGTCGGAACTGATTCACACACCACTATGATTGACGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCCGCAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTGGTTGGGTTCAAGCTATCAGGGAAACTTCAGAATGGTGTAACAGCTACTGATTTGGTGTTGACTGTCACCCAAATGTTAAGAAAGCATGGTGTTGTGGGCAAATTTGTTGAATTCCATGGTGAAGGCGTGGGTAAAATCTCACTTGCTGATAGGGCTACTATTGCTAACATGTCTCCCGAGTATGGTGCGACAATGGGTTTCTTCCCAGTGGATCATGTTACTCTACAGTATCTCAAGTTAACTGGACGAAGTGATGATACGGTTGCTATGATAGAAGCATACCTACGTGCAAATAATATGTTTGTCGACTATAATGAGCCACAACAAGAAAGAGTCTACTCATCTTATCTGGAGCTAGACCTTTCAGAAGTAGAACCTTGTCTTTCTGGGCCAAAGAGACCTCATGACCGAGTCACTTTGAAAAACATGAAACAAGATTGGCACTCTTGCCTTGATAATAAAGTGGGATTCAAGGGATTTGAGGTACCAAAGGAGGCACAAGACAAAGTTGCGAAATTTGATTTTCATGGACAGCCTGCAGAACTTAAGCATGGTAGTGTTGTGATTGCTGCTATAACGAGCTGCACAAATACATCAAACCCTAGTGTTATGCTTGGGGCAGGTCTTGTTGCGAAAAAAGCCTGTGAATTGGGCCTACAGGTCAAACCATGGGTTAAAACAAGTCTTGCACCAGGCTCTGGAGTTGTTACAAAATATTTGCTCAAAAGTGGGTTGCAGAAGTATTTGAACGAGCAAGGGTTCAACATTGTTGGATATGGGTGCACGACATGTATTGGCAATTCAGGAGATTTGGATGCATCAGTTGGTGCTGCCATTACCGACAATGATATCATTGCATCAGCAGTTCTCTCTGGTAATCGAAACTTCGAAGGACGTGTTCATGCCTTGACAAGAGCAAACTATCTTGCATCACCTCCTTTGGTTGTTGCCTATGCTCTAGCTGGCACGGTTGATATCGACTTTGACAAAGAACCAATTGGAGTTGGAAAAGATGGAAAGGATGTTTATTTCAGGGATATCTGGCCAAGTACCGAAGAAATTGCAGAGGCTGTTCAATCAAGTGTCCTGCCTGACATGTTTAAGAGTACTTATAAATCCATCACTGAGGGAAACCCCATGTGGAATGACCTATCAGTTCCAGAATCTAAACTATACACATGGGACCAAAATTCTACCTACATTCATGAGCCACCATATTTCAATAACATGACAATGGACCCACCTGGGCCCCACGGCGTGAAGGACGCCTATTGCTTACTCAACTTTGGTGACAGTATCACAACAGATCACATTTCTCCTGCCGGAAGCATTCACAAAGACAGTCCTGCTGCAAAGTTTCTTCTTGACCGTGGTGTTGACCGCAAGGACTTTAACTCTTATGGTAGTCGAAGAGGTAATGATGAAATTATGGCTAGGGGTACTTTTGCCAATATTCGTCTTGTCAACAAGCTCTTGAATGGGGAAGTTGGCCCAAAGACCGTGCATATTCCCTCTGGGGAGAAACTCTCAGTGTTTGATGCAGCATCAAAATACAAGGCAGCTGGTCAGGATACAATTGTTTTGGCTGGAGCAGAGTATGGAAGTGGAAGCTCTAGAGATTGGGCTGCAAAGGGTCCCATGTTATTGGGGGTTAAAGCGGTAATTGCAAAAAGTTTCGAGAGGATCCATCGCAGTAACTTAGTAGGAATGGGTATTATACCACTTTGCTTCAAAGCTGGTGAAGATGCTGACACGCTACAGCTGACTGGTCATGAACGATACACCATTGACCTTCCAAGCAACATTAGTGAGATCCGACCCGGTCAAGATGTCAAGGTCACAACCGACACTGGAAAATCTTTCACGTGTACTGCCCGCTTTGACACTGAGGTGGAATTGGAGTATTTCAACCATGGTGGCATCCTTCCATACGTTATCCGACAACTAGCTGCAAAAAAGTGA 2964 45.45 MHISGHHSSTLLRRAARSSSSTRLQSSLSSKSPSPSSAPSRSYTTAASTTSRWSHGVNWRSPASLTSQIRIASVASPVLDRFHRSLATRASENAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKSAPKQVEIPFKPARVLLQDFTGVPVVVDLAGMRDAMNNLGGDSQKINPLVPVDLVVDHSVQVDVARTENAVKANMELEFQRNQERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTEGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLQNGVTATDLVLTVTQMLRKHGVVGKFVEFHGEGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLELDLSEVEPCLSGPKRPHDRVTLKNMKQDWHSCLDNKVGFKGFEVPKEAQDKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLKSGLQKYLNEQGFNIVGYGCTTCIGNSGDLDASVGAAITDNDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFDKEPIGVGKDGKDVYFRDIWPSTEEIAEAVQSSVLPDMFKSTYKSITEGNPMWNDLSVPESKLYTWDQNSTYIHEPPYFNNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLDRGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPSGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVKVTTDTGKSFTCTARFDTEVELEYFNHGGILPYVIRQLAAKK 987
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03486 987 SUPERFAMILY LeuD-IlvD-like 725 983 - -
Aary13g03486 987 NCBIfam aconitate hydratase AcnA 111 983 IPR006249 -
Aary13g03486 987 FunFam Aconitate hydratase 749 985 - -
Aary13g03486 987 Gene3D Aconitase, domain 3 94 460 IPR015931 -
Aary13g03486 987 CDD AcnA-IRP 174 658 - -
Aary13g03486 987 FunFam cytoplasmic aconitate hydratase 461 684 - -
Aary13g03486 987 FunFam Aconitate hydratase 93 460 - -
Aary13g03486 987 MobiDBLite consensus disorder prediction 1 47 - -
Aary13g03486 987 CDD AcnA-IRP-Swivel 762 932 IPR044137 -
Aary13g03486 987 Gene3D - 685 746 - -
Aary13g03486 987 Pfam Aconitase family (aconitate hydratase) 153 656 IPR001030 -
Aary13g03486 987 ProSitePatterns Aconitase family signature 1. 521 537 IPR018136 -
Aary13g03486 987 SUPERFAMILY Aconitase iron-sulfur domain 107 721 IPR036008 -
Aary13g03486 987 PRINTS Aconitase family signature 235 248 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 288 301 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 259 267 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 302 317 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 525 536 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 587 600 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 460 474 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 364 377 IPR001030 -
Aary13g03486 987 PRINTS Aconitase family signature 378 391 IPR001030 -
Aary13g03486 987 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 91 984 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Aary13g03486 987 Gene3D Aconitase, domain 3 461 684 IPR015931 -
Aary13g03486 987 ProSitePatterns Aconitase family signature 2. 587 600 IPR018136 -
Aary13g03486 987 Pfam Aconitase C-terminal domain 785 913 IPR000573 -
Aary13g03486 987 Gene3D Aconitase, domain 4 749 985 IPR015928 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03486 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
6416 Aary13g03486 Aary17g02418
6417 Aary13g03486 Aary9g02538
168227 Aary5g02949 Aary13g03486
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr10:217669464 Aary13g03486 Aary-Chr13:209686724 dispersed
Aary Aary-Chr13:209686724 Aary9g02538 Aary-Chr9:154805315 dispersed
Aary Aary-Chr7:66824674 Aary13g03486 Aary-Chr13:209686724 transposed
Aary Aary-Chr13:209686724 Aary15g02985 Aary-Chr15:220936611 wgd
Aary Aary-Chr13:209686724 Aary17g02418 Aary-Chr17:145801521 wgd
Aary Aary-Chr13:209686724 Aary5g02949 Aary-Chr5:180215047 wgd