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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03496 ATGAAGATCCAATGTGATGTTTGTCACAAATCCGAGGCTGTTGTTTATTGTGCGGCCGATGAAGCATCGCTTTGTTCCGCTTGTGACCATCGTGTACATCATGCTAATAAACTTGCTAACAAACATCCGCGATTTTCCCTCATGAATCCTTCTTTTAAAGACTCCCCTCGCTGCGATATTTGTCAGGAGAGGAGAGCATTTCTATTTTGCAAAGAAGATCGAGCTATTCTATGTAGAGAATGTGACATTCCAATACATCAAGCAAACGAACACACACAAAAACACACTCGTTTTCTACTAACAGGAGTTAAGCTCTCAACATCTTTAACATGTTACGATAATTCATTTCACCAAACTCCCTCATCCTCGAATTCAAATGGCTCTACCGTCGAAAGCTCGAAAAGACCAAGTGGTCGAAAAGGTGGGTCGGTTGATAATAATTCGAGTAGTAGTGTGAGTCAAGAAAAAAGTGGTTTCATGGAGGCTAGTAATATATCCGAGTATTTGATGGAAACGTTACCTGGATGGCATGTTGATGAGTTTCTTGATCCTTATGGTTATTGGCTTTAG 570 40.53 MKIQCDVCHKSEAVVYCAADEASLCSACDHRVHHANKLANKHPRFSLMNPSFKDSPRCDICQERRAFLFCKEDRAILCRECDIPIHQANEHTQKHTRFLLTGVKLSTSLTCYDNSFHQTPSSSNSNGSTVESSKRPSGRKGGSVDNNSSSSVSQEKSGFMEASNISEYLMETLPGWHVDEFLDPYGYWL 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03496 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Aary13g03496 189 FunFam B-box zinc finger protein 21 1 98 - -
Aary13g03496 189 CDD Bbox1-BBX-like 58 100 IPR049808 -
Aary13g03496 189 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Aary13g03496 189 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Aary13g03496 189 Gene3D Classic Zinc Finger 1 100 - -
Aary13g03496 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Aary13g03496 189 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Aary13g03496 189 CDD Bbox1-BBX-like 5 47 IPR049808 -
Aary13g03496 189 MobiDBLite consensus disorder prediction 117 157 - -
Aary13g03496 189 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03496 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
6420 Aary13g03496 Aary2g01773
168230 Aary5g02959 Aary13g03496
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr11:39614324 Aary13g03496 Aary-Chr13:210295615 dispersed
Aary Aary-Chr13:210295615 Aary3g00746 Aary-Chr3:32037398 dispersed
Aary Aary-Chr13:210295615 Aary2g01948 Aary-Chr2:136534737 wgd
Aary Aary-Chr13:210295615 Aary2g01790 Aary-Chr2:129286723 wgd
Aary Aary-Chr13:210295615 Aary5g02959 Aary-Chr5:180655080 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aary1g03425 ACH,AST 274 337 C2C2-CO-like Transcription Factor family AT5G15850 47.826 4.07e-11 61.2
Aary2g00725 ACH 270 386 C2C2-CO-like Transcription Factor family AT5G24930 35.246 5.20e-12 65.1
Aary2g01732 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.026 1.09e-133 384.0
Aary2g01742 ACH,AST 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.026 1.09e-133 384.0
Aary2g01773 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 6.76e-96 283.0
Aary2g01790 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 47.899 2.23e-63 200.0
Aary2g01928 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 51.447 1.35e-94 280.0
Aary2g01948 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.319 3.10e-64 202.0
Aary2g02494 ACH,AST 7 355 C2C2-CO-like Transcription Factor family AT5G57660 48.148 3.86e-98 294.0
Aary3g00746 AST 1 322 C2C2-CO-like Transcription Factor family AT1G75540 42.815 1.04e-67 213.0
Aary3g01470 ACH,AST 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.32 3.94e-120 350.0
Aary4g00582 . 9 328 C2C2-CO-like Transcription Factor family AT2G47890 45.902 6.12e-94 282.0
Aary4g02306 . 282 337 C2C2-CO-like Transcription Factor family AT5G15850 42.857 1.27e-10 58.5
Aary4g02307 . 202 270 C2C2-CO-like Transcription Factor family AT2G24790 42.029 7.35e-11 58.9
Aary5g01856 ACH 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.857 2.70e-74 232.0
Aary5g02785 ACH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 49.186 5.19e-83 249.0
Aary5g02959 ACH,AST 1 196 C2C2-CO-like Transcription Factor family AT1G75540 54.5 1.20e-63 197.0
Aary6g02607 ACH,AST 235 333 C2C2-CO-like Transcription Factor family AT5G15850 37.0 7.30e-13 66.6
Aary6g03383 AST 2 272 C2C2-CO-like Transcription Factor family AT2G24790 47.541 1.73e-83 252.0
Aary7g02317 . 287 399 C2C2-CO-like Transcription Factor family AT1G68520 40.0 1.58e-19 87.0
Aary7g02369 AST 8 401 C2C2-CO-like Transcription Factor family AT2G33500 38.242 4.61e-71 226.0
Aary7g02523 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.234 1.01e-136 392.0
Aary7g02568 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.323 2.77e-90 269.0
Aary7g02767 . 1 107 C2C2-CO-like Transcription Factor family AT4G27310 51.402 2.15e-30 108.0
Aary7g02912 ACH,AST 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.323 5.93e-90 268.0
Aary8g00027 ACH 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 2.28e-11 63.2
Aary8g01285 ACH,AST 338 386 C2C2-CO-like Transcription Factor family AT5G24930 55.102 1.57e-11 63.2
Aary9g00725 . 10 303 C2C2-CO-like Transcription Factor family AT1G68190 36.416 2.83e-61 200.0
Aary9g01319 ACH,AST 4 186 C2C2-CO-like Transcription Factor family AT5G54470 41.361 9.81e-30 107.0
Aary9g01370 AST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.624 4.78e-83 243.0
Aary9g01620 AST 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 1.32e-09 56.2
Aary9g01621 ACH,AST 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 2.92e-10 58.2
Aary10g02364 ACH,AST 284 332 C2C2-CO-like Transcription Factor family AT5G57660 53.061 7.73e-11 60.1
Aary10g03196 . 315 386 C2C2-CO-like Transcription Factor family AT5G24930 45.205 6.61e-12 65.1
Aary10g04565 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 48.571 3.72e-114 335.0
Aary10g05235 ACH,AST 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.826 3.46e-129 372.0
Aary10g05597 ACH,AST 285 399 C2C2-CO-like Transcription Factor family AT1G68520 44.828 5.43e-20 89.4
Aary10g05645 ACH,AST 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.632 1.09e-96 290.0
Aary11g00940 AST 1 322 C2C2-CO-like Transcription Factor family AT1G75540 42.522 5.65e-68 213.0
Aary11g01739 ACH,AST 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.577 3.18e-121 353.0
Aary11g03298 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 28.511 1.24e-19 82.4
Aary12g00568 . 9 328 C2C2-CO-like Transcription Factor family AT2G47890 45.902 1.38e-93 281.0
Aary12g00618 . 9 328 C2C2-CO-like Transcription Factor family AT2G47890 45.902 5.86e-94 282.0
Aary13g02360 ACH 9 355 C2C2-CO-like Transcription Factor family AT5G57660 43.407 1.08e-76 238.0
Aary13g03103 . 338 385 C2C2-CO-like Transcription Factor family AT5G24930 50.0 2.53e-09 55.1
Aary13g03325 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.854 1.48e-130 378.0
Aary13g03496 ACH,AST 1 196 C2C2-CO-like Transcription Factor family AT1G75540 54.5 1.20e-63 197.0
Aary14g02697 ACH,AST 235 333 C2C2-CO-like Transcription Factor family AT5G15850 37.0 6.72e-13 66.6
Aary14g03241 AST 2 272 C2C2-CO-like Transcription Factor family AT2G24790 48.344 4.05e-81 246.0
Aary15g02278 AST 8 401 C2C2-CO-like Transcription Factor family AT2G33500 37.753 3.66e-73 233.0
Aary15g02549 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.668 1.43e-138 397.0
Aary15g02587 ACH,AST 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.0 4.20e-89 266.0
Aary16g00026 ACH 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 2.28e-11 63.2
Aary16g01254 ACH,AST 338 386 C2C2-CO-like Transcription Factor family AT5G24930 55.102 1.56e-11 63.2
Aary16g02105 ACH 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 3.28e-09 54.3
Aary17g00766 . 10 303 C2C2-CO-like Transcription Factor family AT1G68190 36.127 2.97e-60 197.0
Aary17g01404 ACH,AST 4 186 C2C2-CO-like Transcription Factor family AT5G54470 41.361 9.81e-30 107.0
Aary17g01457 AST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.624 1.86e-82 242.0
Aary17g01761 ACH,AST 258 331 C2C2-CO-like Transcription Factor family AT5G57660 40.541 1.78e-09 55.8
Aary17g01762 AST 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 1.40e-09 56.6
Aary17g02844 ACH 4 97 C2C2-CO-like Transcription Factor family AT5G54470 55.789 2.98e-32 114.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Aary zf-B_box 1.6e-07 No_clan TR Others