AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03620 ATGTCATCTTTTTCAGTCAAGTTTCTTGCACCAACTTCATTTCTTAACCCTAAAACAACCACCTTCAGCTCCAAGAAACTCTATGCAACTCCACAACAAACCGCAGTTCCAGCATCATCTCCAGTTCCAGCAACAGATATCACGTTAGAAAGACTAGAACCTAGAGTTGAAAAAAAAGATGGATATTATATACTTAAGGAAAAGTTTAGACAAGGTATTAATCCACAAGAAAAAGTTAAGATTGCTAGTGAACCAATGAAACTATTTATGGAAAATGGTATTGAAGATCTTGCTAAGATACCTTTTGAAGACATTGATAAGTCGAAAGATACTAAAGATGATGTTGATGTTAGACTTAAATGGCTTGGTTTGTTTCATCGTAGGAAACATCAATACGGTCGGTTTATGATGAGACTGAAGCTCCCAAATGGTGTAACAACAAGTGCACAAACTCGATACTTAGCCAGCGTCATAAAGGAGTATGGGGAGCAAGGCTGTGCGGATGTTACCACACGCCAAAACTGGCAAATTCGTGGAGTTACATTACCTGATGTACCCGCAATCCTAAAGGGACTTGATGAAGTCGGTTTAACAAGTCTTCAAAGTGGTATGGACAATGTAAGGAACCCTGTTGGGAACCCACTTGCCGGTATTGATCCTCATGAAATTGTGGACACAAGAGTTTATACTAACTTATTGTCGCAATTTATCACTGCTAATTCGCGAGGGAACCCTGAATTCACCAACTTGCCAAGGAAATGGAATGTTTGTGTGATTGGTTCACATGATCTTTATGAACATCCACATATCAATGATCTAGCGTATATGCCAGCTACAAAGAATGGTAAGTTTGGGTTCAACTTGTTGGTGGGTGGATTCTTTAGCCCAAAAAGATGTGAAGAGGCTATTCCTCTTGATGCGTGGGTCCCAGCTGAAGATGTTGTCCCGGTTTGTGGGGCGATTCTTGAGGCTTATCGTGATCTTGGTACAAGAGGGAACAGGCAAAAGACTAGAATGATGTGGTTGATCGATGAACTCGGTGTAGAAGGGTTTCGATCTGAAGTGGTAAAGAGAATGCCCGAACAAGCATTGGAGAGGGCTTCTTCAGAAGATCTCGTTGATCCAAAATGGGAAAGAAGGGACTACTTTGGTGTGCACCCACAAAAACAAGAAGGCCTTAGCTTTGTGGGCATTCACATTCCTGTGGGCCGGATTCAAGCCGATGACATGGACCAACTAGCCCGACTAGCCGATGAATATGGCTCAGGTGAGCTTAGGCTAACCGTGGAACAAAACATCATAATCCCAAACATACCAAACTCAAAAGTCGAAGCTTTGCTTAACGAGCCTCTTCTAAAAGAGAAGTTTTTACCCGAGCCACCTATTTTAATGAAAGGGTTAGTAGCTTGCACGGGTAACCAATTTTGTGGACAAGCCATAATTGAGACAAAAGCCCGTGCTTTGAAGGTTGCAGAAGAAGTTGAAAAACTTGTTTCCGTGACCTATCCAGTGCGAATGCACTGGACTGGCTGCCCAAACACGTGTGGGCAAGTTCAAGTGGCGGATATAGGATTTATGGGATGTATGACTAGGGACAAAAATGGAAAGGTAGTCGAAGGAGCCGATGTTTACTTGGGAGGTAGAATTGGAAGTGACTCACATTTAGGGGATATCTATAAAAAGGCTGTCCCTTGTGAGGACTTGGTGCCCATAGTTGTGGACATTATGGTCGAAAAATTTGGTGCTGTTCTCAGAGAAAGAGAAGAGAGCGAAGAATGA 1779 42.5 MSSFSVKFLAPTSFLNPKTTTFSSKKLYATPQQTAVPASSPVPATDITLERLEPRVEKKDGYYILKEKFRQGINPQEKVKIASEPMKLFMENGIEDLAKIPFEDIDKSKDTKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIKEYGEQGCADVTTRQNWQIRGVTLPDVPAILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRVYTNLLSQFITANSRGNPEFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSPKRCEEAIPLDAWVPAEDVVPVCGAILEAYRDLGTRGNRQKTRMMWLIDELGVEGFRSEVVKRMPEQALERASSEDLVDPKWERRDYFGVHPQKQEGLSFVGIHIPVGRIQADDMDQLARLADEYGSGELRLTVEQNIIIPNIPNSKVEALLNEPLLKEKFLPEPPILMKGLVACTGNQFCGQAIIETKARALKVAEEVEKLVSVTYPVRMHWTGCPNTCGQVQVADIGFMGCMTRDKNGKVVEGADVYLGGRIGSDSHLGDIYKKAVPCEDLVPIVVDIMVEKFGAVLREREESEE 592
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03620 592 Gene3D Sulfite Reductase Hemoprotein, domain 1 196 381 IPR045854 -
Aary13g03620 592 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 52 203 IPR036136 GO:0016491(InterPro)
Aary13g03620 592 ProSitePatterns Nitrite and sulfite reductases iron-sulfur-siroheme-binding site. 509 525 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Aary13g03620 592 Pfam Nitrite and sulphite reductase 4Fe-4S domain 204 361 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Aary13g03620 592 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 4 591 IPR051329 -
Aary13g03620 592 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 340 476 IPR036136 GO:0016491(InterPro)
Aary13g03620 592 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 204 366 IPR045854 -
Aary13g03620 592 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 128 195 IPR005117 GO:0016491(InterPro)
Aary13g03620 592 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 386 450 IPR005117 GO:0016491(InterPro)
Aary13g03620 592 PRINTS Sirohaem Fe-binding site signature 509 527 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Aary13g03620 592 PRINTS Sirohaem Fe-binding site signature 465 483 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Aary13g03620 592 Gene3D - 72 453 - -
Aary13g03620 592 Pfam Nitrite and sulphite reductase 4Fe-4S domain 467 576 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Aary13g03620 592 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 465 576 IPR045854 -
Aary13g03620 592 Gene3D Sulfite Reductase Hemoprotein, domain 1 461 591 IPR045854 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03620 K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]