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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03627 ATGGCGATTAATGTATCATCATCATCTTTGTGTTATTCCACTAATCATGGATCTTCGTTGTTTTTTGCAAACACTACTAATTATCTCAAGATCAATAATAGTAATTATTATTCAAATGTGTCATCGATTAAACACCGATCTGATCTACGTGTCATGTCTTCTATGCGTCGACCCTTAAAAGCAACAGTAGTGACTGGACAGTCATGGAACACATCAGTGCTCGACAGCAAAACACCAGTACTAGTTGAGTTCTACGCCAGTTGGTGTGGACCATGCCAGATGGTGCACCGAGTGATTGATGAGATTGCAGGCGAGTATGCTGGTAAGGTCAAGTGTTTCGTGCTGAATGCTGACCAAGACCCACTAATCGCTGAAGAATATGACATCAAGGCTGTACCCATTGTGCTGGTGTTCAAGAACGGTCAGAAATGTGAGTCGGTGATTGGGACCATGCCGAAAGAATTCTACGTGGCTGCTATCGAAAGAGTCTTGTCATCTTGA 501 42.71 MAINVSSSSLCYSTNHGSSLFFANTTNYLKINNSNYYSNVSSIKHRSDLRVMSSMRRPLKATVVTGQSWNTSVLDSKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGKVKCFVLNADQDPLIAEEYDIKAVPIVLVFKNGQKCESVIGTMPKEFYVAAIERVLSS 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03627 166 PRINTS Thioredoxin family signature 88 97 - -
Aary13g03627 166 PRINTS Thioredoxin family signature 80 88 - -
Aary13g03627 166 PRINTS Thioredoxin family signature 128 139 - -
Aary13g03627 166 FunFam Thioredoxin 55 166 - -
Aary13g03627 166 SUPERFAMILY Thioredoxin-like 58 165 IPR036249 -
Aary13g03627 166 CDD TRX-family 72 161 - -
Aary13g03627 166 ProSitePatterns Thioredoxin family active site. 81 99 IPR017937 -
Aary13g03627 166 ProSiteProfiles Thioredoxin domain profile. 55 166 IPR013766 -
Aary13g03627 166 Pfam Thioredoxin 62 160 IPR013766 -
Aary13g03627 166 PANTHER GEO12009P1 54 164 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Aary13g03627 166 Gene3D Glutaredoxin 61 165 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03627 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
4482 Aary10g05075 Aary13g03627
6442 Aary13g03627 Aary2g01622
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:218104856 Aary7g02722 Aary-Chr7:222557484 dispersed
Aary Aary-Chr10:279478692 Aary13g03627 Aary-Chr13:218104856 wgd
Aary Aary-Chr13:218104856 Aary2g01622 Aary-Chr2:121373332 wgd