AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary13g03647 ATGGCTAGTCAAAGCATTCAAGGCGGTCTCCTTGAAGTCACCGTTGTTAGTTGCAATAAACTAAGGGATACCGAATGGTTCTCAAGGCAAGATCCTTACGTAAGTATCGAATATGGTAGCTATAGATCTTCAACTCGTACTTGTACAGATGGAGGCAAGAGCCCTACATTTCAAGAGAAATTTGTGTTTAGCTTGATTGAAGGATTAAGAGACATAAATGTTTCAGTTTGGAATAGCAATACACTTACACACGATGACTACATTGGTGGCGGAAGAATTCCATTGACAAAGGCTTTTTCTCAAGGATTTGATGATAGTAGTTGGCCGTTACAGAGTAAAACCGGAAGGCATGCCGGAGAGGTCCGACTGATAATGCATTATTCCAATGCCAATAATCCTGGTGCTCAAAAGCCATCAAAAGGTCTTGCTCCACAAGGTGCACCTTCCGGATCCATGTACCCAGCAGCGCCCCCATCCATGTACGGCGCACCACCTCCGGGGTCTATGTACCCTACACCACCACCAGGGTCCATGTACCCCTCGTACCCCCCAAATCCAAGTGCGTATCCACCCACTCCATACCCAAATCAAATGCCTAACTATCCTCCCACACCATATCCTTATGGATCACAGTATCCCCCAGGTTCTCCATTCCCAGGAACGTATCCTCCACCACCTTATTGA 684 46.49 MASQSIQGGLLEVTVVSCNKLRDTEWFSRQDPYVSIEYGSYRSSTRTCTDGGKSPTFQEKFVFSLIEGLRDINVSVWNSNTLTHDDYIGGGRIPLTKAFSQGFDDSSWPLQSKTGRHAGEVRLIMHYSNANNPGAQKPSKGLAPQGAPSGSMYPAAPPSMYGAPPPGSMYPTPPPGSMYPSYPPNPSAYPPTPYPNQMPNYPPTPYPYGSQYPPGSPFPGTYPPPPY 227
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary13g03647 227 Gene3D C2 domain 8 129 IPR035892 -
Aary13g03647 227 Pfam C2 domain 9 100 IPR000008 -
Aary13g03647 227 CDD C2 11 108 - -
Aary13g03647 227 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Aary13g03647 227 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 1 226 IPR052981 -
Aary13g03647 227 MobiDBLite consensus disorder prediction 130 151 - -
Aary13g03647 227 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 6 129 IPR035892 -
Aary13g03647 227 SMART C2-3c 10 107 IPR000008 -
Aary13g03647 227 MobiDBLite consensus disorder prediction 163 227 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary13g03647 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
4468 Aary10g05062 Aary13g03647
6444 Aary13g03647 Aary17g02297
170865 Aary13g03647 Aary5g03153
173171 Aary5g03153 Aary13g03647
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:219561430 Aary17g02297 Aary-Chr17:141188526 dispersed
Aary Aary-Chr10:277600666 Aary13g03647 Aary-Chr13:219561430 wgd
Aary Aary-Chr13:219561430 Aary5g03153 Aary-Chr5:192563370 wgd
Aary Aary-Chr13:219561430 Aary9g02438 Aary-Chr9:152108463 wgd