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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary17g00869 ATGCCAACATTAACTAAGCTGTATACGATGAAAGAAGCATCAGAACATAATTCTGCTGGTGATTGTTGGGTTGTTATTGATGGCAAGGTGTATGATGTGTCATCGTATCTGGATGACCATCCAGGTGGAGATGATGTCCTCCTTCAGGCTACTGGGAAAGACGCCACAGAAGAATTTGAAGACGCAGGTCATAGCAAAACCGCTAGGGAACAAATGGAGACTTTTTGTGTCGGTGAGTTGGACCCATCAGACGCCCCACAACTTGAGGTTGTCACAGAGAAACAAAAGAATTACGTCCCTGAGAAGCTTGTTCAGTTGAGTAAGCAATACTGGGCTGTTCCTGTGGCAGCTGTTGGCATATCTGTGGTGGTCACCGTCTTGTACTTGCGCAAGAAGTAG 399 46.12 MPTLTKLYTMKEASEHNSAGDCWVVIDGKVYDVSSYLDDHPGGDDVLLQATGKDATEEFEDAGHSKTAREQMETFCVGELDPSDAPQLEVVTEKQKNYVPEKLVQLSKQYWAVPVAAVGISVVVTVLYLRKK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary17g00869 132 Gene3D - 4 94 IPR036400 -
Aary17g00869 132 PANTHER CYTOCHROME B5 4 126 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Aary17g00869 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
Aary17g00869 132 SMART Cyt-b5-2 8 81 IPR001199 -
Aary17g00869 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Aary17g00869 132 FunFam Cytochrome b5 type B 3 85 - -
Aary17g00869 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Aary17g00869 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Aary17g00869 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Aary17g00869 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Aary17g00869 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Aary17g00869 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary17g00869 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
70238 Aary Aary17g00869 Aary-Chr17:78659017 Aary5g01211 Aary-Chr5:47328870
148226 Aary Aary17g00869 Aary-Chr17:78659017 Aary9g00825 Aary-Chr9:83237637
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Aary1g01670 . 51 273 NADPH P450 reductases gene family AT5G17770 39.592 3.47e-46 164.0
Aary1g01688 AST 51 273 NADPH P450 reductases gene family AT5G17770 38.589 2.00e-45 163.0
Aary1g03404 ACH,AST 2 133 NADPH P450 reductases gene family AT5G53560 65.152 2.25e-66 196.0
Aary2g00113 . 2 120 NADPH P450 reductases gene family AT1G60660 61.345 1.57e-50 154.0
Aary2g00135 . 2 120 NADPH P450 reductases gene family AT1G60660 62.185 3.39e-51 156.0
Aary2g02707 . 39 281 NADPH P450 reductases gene family AT5G17770 40.23 4.04e-64 200.0
Aary2g02760 . 39 281 NADPH P450 reductases gene family AT5G17770 39.464 6.45e-63 199.0
Aary3g01300 AST 38 273 NADPH P450 reductases gene family AT5G17770 38.76 4.28e-49 173.0
Aary3g01301 AST 38 273 NADPH P450 reductases gene family AT5G17770 38.76 1.53e-48 172.0
Aary3g01811 . 38 273 NADPH P450 reductases gene family AT5G17770 38.372 3.21e-49 174.0
Aary5g01211 AST 7 133 NADPH P450 reductases gene family AT2G32720 75.591 6.09e-74 214.0
Aary5g01348 AST 31 281 NADPH P450 reductases gene family AT5G17770 83.267 1.02e-160 446.0
Aary6g01536 AST 6 83 NADPH P450 reductases gene family AT1G26340 38.462 2.89e-14 65.5
Aary6g01828 AST 1 134 NADPH P450 reductases gene family AT5G48810 50.746 2.61e-47 147.0
Aary8g00183 . 1 130 NADPH P450 reductases gene family AT2G32720 47.826 4.14e-42 134.0
Aary8g02239 ACH 7 132 NADPH P450 reductases gene family AT5G53560 58.73 3.42e-54 164.0
Aary8g02240 . 1 128 NADPH P450 reductases gene family AT5G53560 58.14 7.43e-54 164.0
Aary9g00825 . 1 134 NADPH P450 reductases gene family AT1G26340 61.94 1.39e-57 173.0
Aary9g02590 ACH,AST 30 281 NADPH P450 reductases gene family AT5G17770 73.228 1.48e-139 392.0
Aary10g01736 AST 51 273 NADPH P450 reductases gene family AT5G17770 38.367 2.26e-42 154.0
Aary10g02279 . 2 120 NADPH P450 reductases gene family AT1G60660 63.025 7.69e-53 160.0
Aary10g02344 ACH,AST 2 133 NADPH P450 reductases gene family AT5G53560 65.152 2.25e-66 196.0
Aary11g01542 AST 38 273 NADPH P450 reductases gene family AT5G17770 38.76 1.90e-49 174.0
Aary11g01543 AST 38 273 NADPH P450 reductases gene family AT5G17770 38.76 1.10e-48 172.0
Aary11g02161 . 38 273 NADPH P450 reductases gene family AT5G17770 38.372 3.27e-49 174.0
Aary13g00917 ACH 1 133 NADPH P450 reductases gene family AT5G53560 49.635 1.61e-45 143.0
Aary13g01162 ACH 1 126 NADPH P450 reductases gene family AT5G53560 52.308 3.73e-46 145.0
Aary13g01703 AST 7 133 NADPH P450 reductases gene family AT2G32720 76.378 3.41e-74 215.0
Aary13g01851 AST 31 281 NADPH P450 reductases gene family AT5G17770 83.267 1.02e-160 446.0
Aary13g02597 . 2 120 NADPH P450 reductases gene family AT1G60660 63.025 3.59e-50 153.0
Aary14g01728 AST 6 83 NADPH P450 reductases gene family AT1G26340 38.462 2.33e-14 65.9
Aary14g02053 ACH,AST 1 134 NADPH P450 reductases gene family AT5G48810 50.746 2.61e-47 147.0
Aary16g00225 . 1 130 NADPH P450 reductases gene family AT2G32720 41.83 3.08e-35 117.0
Aary16g00227 . 1 130 NADPH P450 reductases gene family AT2G32720 44.928 1.49e-41 132.0
Aary16g00228 . 1 130 NADPH P450 reductases gene family AT2G32720 45.324 4.96e-41 131.0
Aary16g02330 ACH 1 132 NADPH P450 reductases gene family AT5G53560 57.576 1.74e-56 171.0
Aary17g00869 . 1 134 NADPH P450 reductases gene family AT1G26340 61.94 1.58e-57 173.0
Aary17g01718 ACH 1 133 NADPH P450 reductases gene family AT5G53560 72.18 5.57e-71 207.0
Aary17g02465 ACH,AST 30 281 NADPH P450 reductases gene family AT5G17770 73.228 9.47e-140 393.0