AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aary5g02610 ATGGAAACCTTGAAAAATTCGTTTCATGATACCCGCCGCTGCAACGCAATAGAAAAACTGAAAAAATACACAAAAATGCCGTTTCCGATATTTGATGGAAACATTTACATATCAATCAGGACTCCTTATCTAAAGGTAACATACGATCCACCCACCTCGGATGAGGTGAATAGCAATATCATACCATCTGCGTCTGTGCTAAGGCAGCTGGCTATAGGTGTTGAGACCACAAAAGTTATAAAGTCAATGAAGGATCTGATAATAGTATCAAGAGATTCTTCACCTGTGAAGGAGAGATCTGGTTTGAGCTTATCTGCTGTAAAGTCATTTGTGGTGGGGGATAGAGATGATAAATTTGCTCTTGAATTCGGTCGTGATGAAAAAGTAATGTCTTTTATCCAGTCTCTGCAGAATCCAGAAGGAAATCTTTCTCGAAGGAAGACTGGCCCCCTCTTTGAGACGTATACGAGCATTACGAATTTTGCCAAAGAGCTTCATGGTGCTCCTCCCGAGAACTTTGTTACAGAGCTGGCTGAAGCCGTTGGAAGCTTAAGAACTTTGAAGAAAATGGCATTGTTTTGGTCCCGGGTCGTCGAAGAATTGAGAAGGCTATGGAGTGAAGGACAATATATTCCTGGAATCCCTGAAGATAAAGTTCCAGATATAAATTCCTGTTTGTTATATCAGCAGTTGCAGGTTATAAATTGCTGTATATCTAGAAAACGACGACGTGCTATTGTCACAGAATCATTAGAAGCTGTTTTAAAGCAAGCTAAAAATAACGCCGGCAAGTCTGCTCCTGGAGGAAATACGGAAAACCCTCTTGTGTATGCTAAAGATAGCTCTGGTGAACATGTGCTTCGATTAGGAGCAGACAAACAGCTTGAGAACACGACACTTTTGGATACCGGTGAACCTGTGTATACTCCTGTTTTGCAGGAAGGGCCTTTACTCACGGAAGACATTATTAAAGAAACAGAGGAATTTGTTTTACGTACCGGAAGCGTTGGTGCAGGCTGCTCTCAGCTTCTCTCGGATATGCAGGCTTTCAAGGCAGCAAATCCAGGGTGCATTTTAGAAGATTTTATTAGATGGCACTCACCCCCTGATTGGACCGAATCATTAATGGATGATGATACTAAAGAATCTGACGATGAGAATCTTTCGCCTTCAAGAGGATACCTGAGTATTCGTATGCGGAAAGCAGGTAATTTGTGGCGAGAACTTTGGGAAACTGCAAAACCGATACCTGCTGTTAGACAGTCACCTCTATACTACGAGGATTTATCTGTGGAAGGGATTCTGCATGGCTTTGAGAGTATCTCACCTTCTGGTTTCTTTGAGCAGCTCTTTCTTTCTCTTCTCAGTTCTGGATGTGCAATTGCTGAGGCCAGAATATCGAGTAATGAATATCTGTACAACCTGTTCAAGGAGTCCAAAGACTATATCATCATTACCTGTCAAGGTAAAAATTGGGTTGAGAAAACGCAAGAGATATGCCAGGTCTATGAGACGGTGACAGTGATGGCATTGAACCCAGATATGGTTATAAGGCTCACGAAGCCGAAGCATGATCAAAACCCTGCAAGCGTCTTAGAAACAGAATCAGAGGACCCAAAGAGCCAAAAAGACAGCCCTACAACAGTACTGTGCCCCACAATGTTTTCAAAGAAGCCACCCAAGCCTACATCCCCTTATAATGAGAAACAAGTTGGTTTCTTTGATAATGAACGGATAGCAGATGCGGTCCTGCCCTTCAAAATAGTGTAG 1770 42.43 METLKNSFHDTRRCNAIEKLKKYTKMPFPIFDGNIYISIRTPYLKVTYDPPTSDEVNSNIIPSASVLRQLAIGVETTKVIKSMKDLIIVSRDSSPVKERSGLSLSAVKSFVVGDRDDKFALEFGRDEKVMSFIQSLQNPEGNLSRRKTGPLFETYTSITNFAKELHGAPPENFVTELAEAVGSLRTLKKMALFWSRVVEELRRLWSEGQYIPGIPEDKVPDINSCLLYQQLQVINCCISRKRRRAIVTESLEAVLKQAKNNAGKSAPGGNTENPLVYAKDSSGEHVLRLGADKQLENTTLLDTGEPVYTPVLQEGPLLTEDIIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFIRWHSPPDWTESLMDDDTKESDDENLSPSRGYLSIRMRKAGNLWRELWETAKPIPAVRQSPLYYEDLSVEGILHGFESISPSGFFEQLFLSLLSSGCAIAEARISSNEYLYNLFKESKDYIIITCQGKNWVEKTQEICQVYETVTVMALNPDMVIRLTKPKHDQNPASVLETESEDPKSQKDSPTTVLCPTMFSKKPPKPTSPYNEKQVGFFDNERIADAVLPFKIV 589
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aary5g02610 589 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 57 526 IPR045700 GO:0005096(InterPro)|GO:0005096(PANTHER)|GO:0043547(PANTHER)|GO:0043547(InterPro)
Aary5g02610 589 MobiDBLite consensus disorder prediction 526 569 - -
Aary5g02610 589 MobiDBLite consensus disorder prediction 528 542 - -
Aary5g02610 589 Pfam Rab3 GTPase-activating protein catalytic subunit 287 439 IPR026147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aary5g02610 K18270 Rab3 GTPase-activating protein catalytic subunit
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Event-related genes

Select Gene_1 Gene_2 Event_name
6869 Aary15g00549 Aary5g02610
9833 Aary5g02610 Aary7g00749
174874 Aary5g02610 Aary13g03130
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Aary Aary-Chr13:185282459 Aary5g02610 Aary-Chr5:150597026 wgd
Aary Aary-Chr15:26701059 Aary5g02610 Aary-Chr5:150597026 wgd
Aary Aary-Chr5:150597026 Aary7g00749 Aary-Chr7:37630875 wgd