AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aary5g02614 | ATGGCCAAAAGCTCATTCAAATTGGAACATCCACTAGAGAGGCGACAAGCTGAGGCTGCTCGCATCAGGGAGAAGTATCCCGACAGAATTCCGGTTATTGTGGAGAAGGCTGAGAGAACCGATATACCTGACATTGACAAGAAAAAATATCTAGTTCCTGCTGATCTGACAGTTGGACAGTTTGTGTATGTTGTGAGAAAGAGAATTAAGCTGAGTGCGGAAAAGGCCATCTTTATTTTTGTCAAGAACATCCTACCACCTACTGCTGCAATGATGTCTGCTATATACGAAGAAAACAAAGACGAAGATGGTTTTCTTTACATGACTTACAGTGGGGAGAATACGTTTGGATTACTTTGA | 360 | 41.94 | MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLL | 119 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aary5g02614 | 119 | Gene3D | - | 1 | 118 | - | - | |
| Aary5g02614 | 119 | SUPERFAMILY | Ubiquitin-like | 3 | 117 | IPR029071 | - | |
| Aary5g02614 | 119 | FunFam | Autophagy-related protein | 1 | 117 | - | - | |
| Aary5g02614 | 119 | Pfam | Autophagy protein Atg8 ubiquitin like | 14 | 117 | IPR004241 | - | |
| Aary5g02614 | 119 | CDD | Ubl-ATG8 | 12 | 114 | - | - | |
| Aary5g02614 | 119 | PANTHER | MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED | 3 | 117 | IPR004241 | GO:0006995(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aary5g02614 | K08341 | GABA(A) receptor-associated protein |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 6870 | Aary15g00555 | Aary5g02614 | |
| 9834 | Aary5g02614 | Aary7g00744 | |
| 174875 | Aary5g02614 | Aary13g03134 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 81440 | Aary | Aary4g01393 | Aary-Chr4:83116562 | Aary5g02614 | Aary-Chr5:151088136 | |
| 81446 | Aary | Aary4g01401 | Aary-Chr4:83683146 | Aary5g02614 | Aary-Chr5:151088136 | |
| 82967 | Aary | Aary5g00104 | Aary-Chr5:3291229 | Aary5g02614 | Aary-Chr5:151088136 | |
| 84779 | Aary | Aary5g02614 | Aary-Chr5:151088136 | Aary9g04074 | Aary-Chr9:197469419 | |
| 135463 | Aary | Aary13g03134 | Aary-Chr13:185805956 | Aary5g02614 | Aary-Chr5:151088136 | |
| 141553 | Aary | Aary15g00555 | Aary-Chr15:26949635 | Aary5g02614 | Aary-Chr5:151088136 | |
| 153489 | Aary | Aary5g02614 | Aary-Chr5:151088136 | Aary7g00744 | Aary-Chr7:37336974 |